Gene Information

Name : Rxyl_0848 (Rxyl_0848)
Accession : YP_643627.1
Strain : Rubrobacter xylanophilus DSM 9941
Genome accession: NC_008148
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 888346 - 889095 bp
Length : 750 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: ATPase; KEGG: sco:SCO4666 putative ABC-transporter ATP-binding protein

DNA sequence :
ATGCGCGACGGAGACGGGCCCGCCGTAAAGACGCTGAGCCTGGAGAAGGTCTACGGCTCGGGCCCCACCGCCGTGCGCGC
CCTGCGCGGCGTCTCTTTGAGCTTCCCGGACGGCGAGTTCGCCGCCATCATGGGCCCCTCGGGATCGGGCAAGAGCACGC
TGCTGCACCTCCTGGGCGGGCTGGACCGGCCCACCTCCGGCCGGGTCGTGGTCGGCGGGAACGACCTCTCGGGCCTCTCC
GACCGGCGGCTCACCCTGCTGCGCCGGGAGCGGATCGGGTTCGTCTTCCAGTTCTTCAACCTCATCCCCACCCTCACCGC
CGAGGAGAACATCCTCCTGCCCGCCCTCATAGCCGGCGAGAGGCCCTCCCGCTACGCCGGCCGGCTGGAGGAGCTGCTCG
GCCTCGTGGGCCTCGAAGGGCGCCGCCGGCACCGCCCGGACGAGCTCTCCGGCGGCGAGCAGCAGCGGGTGGCCATAGCC
CGGGCCCTGCTCCGCAGCCCGGACATCGTGCTCGCCGACGAGCCGACCGGCAACCTGGACTCCGGCACCGGCACCGGGGT
GCTGGAGCTGCTGCGCGAGTCGGCCGGGCGCTACGGGCAGACCATCATCATGGTCACCCACGACCCCCGGGCCGCCTCCT
TCGCCGACCGGGTGGTGTTCCTCTCCGACGGGCGGGTGGTGGACGAGGCCGGGGGGCTGGGCGCGGAGGCGATCCTGGAG
CGGATAAAGCGGCTGGAGGCCGCGGGCTAG

Protein sequence :
MRDGDGPAVKTLSLEKVYGSGPTAVRALRGVSLSFPDGEFAAIMGPSGSGKSTLLHLLGGLDRPTSGRVVVGGNDLSGLS
DRRLTLLRRERIGFVFQFFNLIPTLTAEENILLPALIAGERPSRYAGRLEELLGLVGLEGRRRHRPDELSGGEQQRVAIA
RALLRSPDIVLADEPTGNLDSGTGTGVLELLRESAGRYGQTIIMVTHDPRAASFADRVVFLSDGRVVDEAGGLGAEAILE
RIKRLEAAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-34 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-35 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 44
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 9e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rxyl_0848 YP_643627.1 ABC transporter-like protein CP001581.1.gene798.p Protein 2e-44 53
Rxyl_0848 YP_643627.1 ABC transporter-like protein NC_008702.1.4606598. Protein 4e-34 53
Rxyl_0848 YP_643627.1 ABC transporter-like protein CP001581.1.gene598.p Protein 5e-45 48
Rxyl_0848 YP_643627.1 ABC transporter-like protein NC_012469.1.7686878. Protein 6e-39 46
Rxyl_0848 YP_643627.1 ABC transporter-like protein NC_012469.1.7686946. Protein 1e-21 44
Rxyl_0848 YP_643627.1 ABC transporter-like protein NC_012469.1.7685735. Protein 7e-32 44