|
Name : Rxyl_0676 (Rxyl_0676) Accession : YP_643458.1 Strain : Rubrobacter xylanophilus DSM 9941 Genome accession: NC_008148 Putative virulence/resistance : Virulence Product : ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 708568 - 711228 bp Length : 2661 bp Strand : + Note : PFAM: UvrB/UvrC protein AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: sco:SCO6408 clp protease ATP binding subunit DNA sequence : ATGGGACAGAGAAGGGTTTGCAGGGTCTGCGGCAGGCCGGCGACGGTAACGATCCGCAGGATCATACCCGGCGAGCCGCC CCGGGTGGAGTACTACTGCGAGGAGCACGCGGCGCAGGCCCGGGGCGGGCGCTCGCCCTTCGGCGGGGGCGGCAGCCTCT TCGACCAGTTCTTCAACCGGTTCTTCGAGGAGGAACCCTTCGGGGGTAGGGCCGCGGTGCCCTCCGGCGGCCGGAGGGCC GAGCAGGTGGACGTCACCCAGTTCTTCTCCGAGAGCACCAACGAGCTCTTGCAGCGGGCGGCGCAGCAGGCCATGGAGTG GGGCAGCCTCGACCTCGGCAGCGAGCACCTGCTCCACGGGGCGCTCGGGGACGAGGTCGTGCGGCGGGTGCTCGAGCGGG CCGACGCCGACCCCGACGCCATAAGGCGCCAGATCGAGGAGGAGGTCGAGAAGGCCGGGCGCAAGGACGTGGCCCCCTCC CTCTCCCCGGAGGCCAAGCGGGCGCTCCTCGCCGCCTACGAGGAGTCGCAGGAGCTCGGCGCCTCCTACATCGGGCCCGA GCACATCCTGCTCGCGCTCGCCCGGGACGAAGACTCCGAGGCCGGGCGGATGCTGCGGCGCTTCGGGCTCTCGCACACCC GGCTGCGCGGGGCCGTGGTGCGCGGTGTGGACGAGGGCGGGGGCGTGCGGGAGGCCCCCAGCGACACCCCCACCCTCGAC GAGTACAGCCGCGACCTCACCCGGATGGCCCGGGAAGGCAAGCTCGACCCCGTCGTCGGGCGCTCCGAGGAGATAGAGAC CACCATCGAGATCCTCTCGCGCCGGACCAAGAACAACCCCGTGCTCATCGGCGACCCGGGCGTCGGCAAGACCGCCATCG TCGAGGGCATAGCCCAGAGGATCGTCAACGGCGAGGTGCCCGAGACCCTCGCCGGCAAGCGGGTCCTGGCGCTCGACCTC GCCGGGATGGTCGCCGGGACCAAGTACCGCGGCGAGTTCGAGGAGCGCCTCAAGAAGGTCATAGACGAGATCCGCGAGCA CTCCGACGAGCTGATCATCTTCATCGACGAGCTGCACACCGTGGTGGGCGCGGGGGCCGCCGAGGGGGCCATGGACGCCT CCAACATGCTCAAGCCCGCGCTCGCCCGCGGCGAGCTGCACGTCATCGGGGCCACCACCATAGACGAGTACCGCAAGAAC ATCGAGAAGGACGCCGCGCTCGAGCGGCGCTTCCAGCCGGTCCTGGTGAGCGAGCCCTCCGTGGAGGAGACCGTGGAGAT CCTCACCGGGCTCAAGGACCGCTACGAGGCCCATCACGGCGTGAAGATCTCCGAGGAGGCCATCGTAGCCGCCGCCGAGC TCTCCGACCGCTACATCACCGACCGGTTCCTGCCGGACAAGGCCATAGACCTCATGGACCAGGCGGCGGCGCGGGTCAAG CTCCGCTCCCGGACCAAGCCCGAGGACGCCCGGGAGATAGAGGAGGAGATAAAGAAGCTGCAGCGGGAGAAGGACCGGGC CGTCTCCGCCGAGGACTACCGGCGCGCCCAGGAGCTGAAGGGCCAGATCCAGGAGCTCAAGGACCGGCTCGGGGCCTACC GGGCCGGCGGGCGCGGGGCGCCGGAGGTGACCGCCGAGGACATCGCCGAGGTGGTGAGCCGCCAGACCGGCATACCGGTC TCTCAGCTCACCCAGGAGGAGCGCGAGCGGCTGCTGCGGCTCGAGGAGCGGCTGCACGAGCGGGTCGTCGGCCAGGACGA GGCCGTCGAGGCCGTCGCCGAGGCCATAAGGCGCGCCCGGGCCGGGCTCTCCGACCCCAACCGCCCCATCGGCTCCTTCC TCTTCCTCGGGCCCACGGGCGTGGGGAAGACGGAGCTTGCGCGCACGCTCGCCGAGGCGCTCTTCGGCGACGAGGCGGCG ATGGTGCGCATCGACATGAGCGAGTTCCAGGAGCGGCACACCGTCTCGCGGCTGGTGGGCGCGCCCCCGGGCTACGTGGG CTACGAGGAGGCCGGGCAGCTCACCGAGGCCGTCAGGCGCAGGCCCTACTCCGTGCTGCTGCTGGACGAGATAGAGAAGG CCCACCCCGACGTCTTCAACCTCCTCTTGCAGATCCTGGACGAGGGGCGCCTCACCGACGCCCAGGGCCGGACGGTGGAC TTCAAGAACACCGTCATCATCATGACCAGCAACCTCGGGGCCGAGAGGATCCAGGCGCACGCCCGCAGGAAGGAGTCCTT CGAGGAGCTCAAGGAGGACATGATGCAGATCGTGCGCCGTTCCTTCAGGCCCGAGTTCATAAACCGGATAGACGAGATCA TCATCTTCAGGGCCCTGAGCCGGGAGCAGATCCTGGAGATAGCCCGCCTGCTCCTGGAGCGCACCAGGCGGCGCCTCAAG GCCCAGGACATAGAGGTGGAGTTCACCGACGCCGCCGTGGAGCACATCGCCGGCGAGGGCTTCGACCCCGAGTTCGGGGC CAGGCCCCTCAGGCGCACCATCCAGCGGCAGGTGGACAACGAGCTCTCCAGGCTGCTCCTCGAGGGCTCCGTGGAGCCCG GCGACAGGGTGGTGGTCGGCGCCGAGGACGGCCGCCTGACCTTCGAGGTGCAGAAGGAGGCGGCCGCCGCCGTCGGCGAG CGCGACGGGCGCGGGGAGTGA Protein sequence : MGQRRVCRVCGRPATVTIRRIIPGEPPRVEYYCEEHAAQARGGRSPFGGGGSLFDQFFNRFFEEEPFGGRAAVPSGGRRA EQVDVTQFFSESTNELLQRAAQQAMEWGSLDLGSEHLLHGALGDEVVRRVLERADADPDAIRRQIEEEVEKAGRKDVAPS LSPEAKRALLAAYEESQELGASYIGPEHILLALARDEDSEAGRMLRRFGLSHTRLRGAVVRGVDEGGGVREAPSDTPTLD EYSRDLTRMAREGKLDPVVGRSEEIETTIEILSRRTKNNPVLIGDPGVGKTAIVEGIAQRIVNGEVPETLAGKRVLALDL AGMVAGTKYRGEFEERLKKVIDEIREHSDELIIFIDELHTVVGAGAAEGAMDASNMLKPALARGELHVIGATTIDEYRKN IEKDAALERRFQPVLVSEPSVEETVEILTGLKDRYEAHHGVKISEEAIVAAAELSDRYITDRFLPDKAIDLMDQAAARVK LRSRTKPEDAREIEEEIKKLQREKDRAVSAEDYRRAQELKGQIQELKDRLGAYRAGGRGAPEVTAEDIAEVVSRQTGIPV SQLTQEERERLLRLEERLHERVVGQDEAVEAVAEAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELARTLAEALFGDEAA MVRIDMSEFQERHTVSRLVGAPPGYVGYEEAGQLTEAVRRRPYSVLLLDEIEKAHPDVFNLLLQILDEGRLTDAQGRTVD FKNTVIIMTSNLGAERIQAHARRKESFEELKEDMMQIVRRSFRPEFINRIDEIIIFRALSREQILEIARLLLERTRRRLK AQDIEVEFTDAAVEHIAGEGFDPEFGARPLRRTIQRQVDNELSRLLLEGSVEPGDRVVVGAEDGRLTFEVQKEAAAAVGE RDGRGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 5e-160 | 51 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 8e-88 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rxyl_0676 | YP_643458.1 | ATPase | VFG0079 | Protein | 3e-180 | 53 |
| Rxyl_0676 | YP_643458.1 | ATPase | VFG0080 | Protein | 5e-136 | 52 |
