Gene Information

Name : Rxyl_0416 (Rxyl_0416)
Accession : YP_643202.1
Strain : Rubrobacter xylanophilus DSM 9941
Genome accession: NC_008148
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 448438 - 449292 bp
Length : 855 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: ATPase; KEGG: syn:slr1318 ABC-type iron(III) dicitrate transport system ATP-binding protein.

DNA sequence : 
TTGAAGGAGCTCGGGAGGCTGTTGAAGAGGGTGGAGGCACCGGCGGGACCGGCCAAGCTCAGGGCAGAGGGGCTCGTCCT
CGGCTACGACGAGGCGACCGTCATAGACGGGCTCGAGGTGGAGGTGCCGCCCGGGAGGATCACCTCCGTCGTCGGCCCCA
ACGGCTGCGGCAAGTCCACCCTGCTCCGCTCCCTGGCCCGCCTCCTGCGGCCGCGCGGCGGGGGCGTCTACCTGGACGGC
AAGGAGATCTTCTCGCTCCCCACCCGCGAGGTCGCCAGGCGGCTGGGCATCCTGCCGCAGAGCCCCGAGGCCCCCGAGGG
CCTCACCGTCCGGGAGCTCGCCGCCCAGGGGCGTTACCCGCACCAGAGCTGGCTCTCCCAGTGGTCGGCCTCCGACGAGC
GGGCCGTGGAGCGGGCGCTGCAGAAGACCGGCATGCTCCCCCTCGCCGACCGGCCCCTCGACACCCTCTCCGGCGGCCAG
CGGCAGCGCGCCTGGATCTCGATGGCCCTCGCCCAGGAGACGGAGACCCTGCTCCTGGACGAGCCGACCACCTTTCTGGA
TTTGGCCCACCAGCTGGAGGTGCTGCAGCTCCTCGGGCGCCTCAACGCCGAGGAGGGCCGCACCGTGGTCATGGTCCTCC
ACGACCTCAACAACGCCGCCCGCTACTCGCACCACGTGATCGCCCTGCACGACGGCGGGGTCTACGCCGCGGGGCCGCCG
GAGGAGGTCGTGACCCCGGAGCTGCTCCGGGACGTCTTCCACGTGGAGGCGGACGTCGTCGCCGACCCCAGGACCGGGCT
CCCGCTGTGCGTCCCCTACGGCCTGCGCCGCCGCGCGGAAGGGGAGGAGGCGTGA

Protein sequence : 
MKELGRLLKRVEAPAGPAKLRAEGLVLGYDEATVIDGLEVEVPPGRITSVVGPNGCGKSTLLRSLARLLRPRGGGVYLDG
KEIFSLPTREVARRLGILPQSPEAPEGLTVRELAAQGRYPHQSWLSQWSASDERAVERALQKTGMLPLADRPLDTLSGGQ
RQRAWISMALAQETETLLLDEPTTFLDLAHQLEVLQLLGRLNAEEGRTVVMVLHDLNNAARYSHHVIALHDGGVYAAGPP
EEVVTPELLRDVFHVEADVVADPRTGLPLCVPYGLRRRAEGEEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-49 51
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-45 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-48 49
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-48 49
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-48 49
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-48 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-40 48
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-43 44
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-43 44
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-43 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-43 44
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-39 42
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-39 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 3e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rxyl_0416 YP_643202.1 ABC transporter-like protein BAC0164 Protein 1e-45 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rxyl_0416 YP_643202.1 ABC transporter-like protein VFG0925 Protein 3e-51 53
Rxyl_0416 YP_643202.1 ABC transporter-like protein VFG1042 Protein 1e-45 49