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Name : Rxyl_1086 (Rxyl_1086) Accession : YP_643864.1 Strain : Rubrobacter xylanophilus DSM 9941 Genome accession: NC_008148 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1117182 - 1118456 bp Length : 1275 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTGGATCTCAGGTACATCCGCGAGAACGCCGAGGCGGTAAAGAAGAACTGCAGGGACAGGGGCGTCGAGGCCGACGT GGACCTCGTCGTCGAGCTGGCCGACCGCCGCTCCGCCCTCATCCGAGAGCTGGAGGGGCTCAGGGCCCGCCAGAACCAGC TGGCCAAGGCCGTGGCCAAGGAGCGCGACGAGCGCTCCCGGGGGCGGCTCATAGAGGAGTCGCGCGAGCTCAAGGGCCTC ATCCCCCGGCGGGAGGAGGAGCTGCGCGGGGTGGAGGAGCGGCTCGCCGAGGAGCAGCTTAAGATCCCCAACATGACCCA CCCGGAGGCCCCCGTCGGCCGGGACGACTCCGAGAACGTGGAGATAAGGCGCTGGGGGGAGGCGCCGGAGTTCGGCTTCG AGCCCAAGGACCACGTCGAGCTCGGGGAGGCGCTCGGCATCATAGACTTCGACGCCGGGGCGAAGACCACGGGCAGCAAG TTCTACTTCCTGCGCGGGGAGGCGGTGCTGCTCGAGCTCGGGCTCGTGCGCTTCGCGCTCGACCTGCTGGCCGGTCGGGG CTACGAGCTCGCCATGACCCCGGACCTGGCGCGCGACAGGATGCTGCTCGGGACCGGGTTCGTGCCGCGCGGGCCGGAGA CCCAGATCTACTCGGTCGAGAACACCGACCTCTCCCTCATCGCCACCGCCGAGATAACGCTGGCCGGGCAGCTCGTCGAC GAGATCGTGGCGGAGGAGAGCCTGCCCCGCCGCTTCGCCGGGCTCTCCCACTGCTTCCGCACCGAGGCCGGGGCCCACGG GCGCGCCAGCCGCGGGCTCTACCGGGTGCATCAGTTCACCAAGGTGGAGATGTTCGCCTTCACCACCCCCGAGCAGTCCG GGGAGATGCACGAGGAGATGCTCTCCATAGAGGAGGAGATCTTCCGGACGCTCGAGATCCCCTACCGGGTGGTGGACATC TGCACCGGGGACCTCGGGGCGGCTGCCTACCGGAAGTACGACGTGGAGGCCTGGATGCCGGGCCGCGGGGACTACGGGGA GGTTACCAGCACCTCCAACACCACCGACTACCAGGCGCGGCGGCTGGGGATCCGCTACCGCCCCGAGGGCGGCCGGCCGC GGCTGCTGCACACCCTCAACGGGACCGCCATCGCCGTGAGCCGGACCATGATCGCCCTGCTGGAGAACCACCAGCGGGAG GACGGGTCGGTCGCGCTGCCGGAGGCGCTGGTGCCCTACGTGGGCAGGGAGGTCATCGGGCCGGCGCGCCGGTAG Protein sequence : MLDLRYIRENAEAVKKNCRDRGVEADVDLVVELADRRSALIRELEGLRARQNQLAKAVAKERDERSRGRLIEESRELKGL IPRREEELRGVEERLAEEQLKIPNMTHPEAPVGRDDSENVEIRRWGEAPEFGFEPKDHVELGEALGIIDFDAGAKTTGSK FYFLRGEAVLLELGLVRFALDLLAGRGYELAMTPDLARDRMLLGTGFVPRGPETQIYSVENTDLSLIATAEITLAGQLVD EIVAEESLPRRFAGLSHCFRTEAGAHGRASRGLYRVHQFTKVEMFAFTTPEQSGEMHEEMLSIEEEIFRTLEIPYRVVDI CTGDLGAAAYRKYDVEAWMPGRGDYGEVTSTSNTTDYQARRLGIRYRPEGGRPRLLHTLNGTAIAVSRTMIALLENHQRE DGSVALPEALVPYVGREVIGPARR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 5e-68 | 42 |
