Gene Information

Name : YPA_CD0004 (YPA_CD0004)
Accession : YP_636795.1
Strain :
Genome accession: NC_008122
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1317
EC number : -
Position : 3294 - 3926 bp
Length : 633 bp
Strand : -
Note : -

DNA sequence : 
ATGCAGCCATTTGTTCAAATAATACCAAGTAATCTCTCGCTCGCTTGCGGTCTGCGTATTTTGCGCGCCGAAGATTACCA
ATCCAGTTTAACAACCGAAGAGTTGATTAGTGCCGCAAAACAGGATGCTGAAAAGATCCTGGCTGACGCCCAAGAGGTTT
ATGAGCAACAAAAGCAGTTAGGATGGCAGGCTGGCATGGATGAGGCGCGTACCTTACAGGCGACTTTGATTCATGAAACA
CAGTTACAATGTCAGCAATTTTATCGCCACGTCGAACAACAGATGAGTGAAGTTGTACTTTTGGCGGTACGTAAAATCCT
CAATGACTATGATCAAGTGGCTATGACACTGCAAGTTGTGCGGGAGGCTTTAGCCTTGGTGAGTAATCAGAAGCAAGTCG
TGGTCAGGGTCAACCCTGATCAGGCAGGAGCTATTCGTGAACAAATAGCTAAAGTACATAAAGACTTCCCGGAAATAAGC
TATTTAGAGGTGACTGCCGATGCGCGTTTGGATCAAGGGGGCTGTATATTAGAGACTGAGGTAGGTATTATTGACGCGAG
TATTGATGGGCAAATTGAAGCACTTTCTCGGGCAATATCTACCACTTTAGGACAAATGAAAGTTACAGAATAG

Protein sequence : 
MQPFVQIIPSNLSLACGLRILRAEDYQSSLTTEELISAAKQDAEKILADAQEVYEQQKQLGWQAGMDEARTLQATLIHET
QLQCQQFYRHVEQQMSEVVLLAVRKILNDYDQVAMTLQVVREALALVSNQKQVVVRVNPDQAGAIREQIAKVHKDFPEIS
YLEVTADARLDQGGCILETEVGIIDASIDGQIEALSRAISTTLGQMKVTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAO18079.1 LscL Not tested TTSS locus Protein 5e-66 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPA_CD0004 YP_636795.1 type III secretion system protein VFG0411 Protein 5e-94 100
YPA_CD0004 YP_636795.1 type III secretion system protein VFG0220 Protein 2e-57 57