Gene Information

Name : YPA_CD0027 (YPA_CD0027)
Accession : YP_636819.1
Strain :
Genome accession: NC_008122
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG4783
EC number : -
Position : 21627 - 21971 bp
Length : 345 bp
Strand : +
Note : -

DNA sequence : 
ATGAATATTACTTTAACCAAACGACAACAGGAGTTCTTGCTGCTCAACGGTTGGTTACAACTACAATGTGGCCATGCAGA
GCGCGCATGTATTCTATTGGACGCCTTGCTGACGTTAAATCCTGAGCATTTAGCCGGTCGGCGTTGCCGATTAGTCGCGC
TACTTAATAATAACCAGGGAGAACGTGCCGAAAAAGAAGCGCAATGGCTAATATCACATGACCCTTTACAGGCTGGGAAT
TGGCTCTGTTTGAGCCGCGCCCAACAACTGAACGGCGATCTTGATAAGGCTCGCCATGCTTATCAACATTATTTGGAGTT
GAAAGATCATAATGAATCCCCATGA

Protein sequence : 
MNITLTKRQQEFLLLNGWLQLQCGHAERACILLDALLTLNPEHLAGRRCRLVALLNNNQGERAEKEAQWLISHDPLQAGN
WLCLSRAQQLNGDLDKARHAYQHYLELKDHNESP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssC AAO18049.1 LssC Virulence TTSS locus Protein 9e-13 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPA_CD0027 YP_636819.1 type III secretion protein VFG0385 Protein 3e-47 100
YPA_CD0027 YP_636819.1 type III secretion protein VFG0197 Protein 9e-05 46