Gene Information

Name : YPA_CD0016 (YPA_CD0016)
Accession : YP_636808.1
Strain :
Genome accession: NC_008122
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 13802 - 14587 bp
Length : 786 bp
Strand : -
Note : -

DNA sequence : 
ATGATAGCGGATTTAATCCAAAGACCATTGCTCACTTATACCCTGCTGTTGCCTCGTTTTATGGCTTGTTTTGTTATATT
GCCAGTGTTAAGTAAACAGCTCCTCGGTGGAGTATTGCTGCGTAATGGTATTGTCTGTTCATTGGCTCTTTATGTCTATC
CTGCCGTCGCTAACCAACCTTATATTGAGGTTGATGCGTTTACGTTGATGCTGCTTATCGGCAAAGAGATCATACTGGGG
TTATTGATTGGGTTTGTGGCCACCATTCCTTTCTGGGCCTTAGAATCCGCAGGATTTATTGTAGATAACCAAAGAGGTGC
CGCGATGGCATCTCTACTCAATCCTGGACTTGATAGTCAAACTAGTCCGACTGGTTTACTTTTGACTCAAACGTTAATAA
CAATTTTCTTCAGCGGAGGGGCTTTCCTCTCTTTGCTTTCAGCCCTCTTTCACAGCTATGTAAATTGGCCGGTGGCCAGC
TTTTTCCCTGCAGTTAGTGAACAGTGGGTTGATTTCTTTTATAACCAATTCAGCCAGATACTATTAATCGCCGCTGTATT
GGCTGCTCCTTTACTCATCGCTATGTTTTTAGCTGAATTTGGACTTGCACTCATCAGTCGTTTTGCGCCTTCTTTAAACG
TCTTTGTGCTGGCTATGCCGATAAAAAGCGCGATAGCAAGCCTGTTGTTGGTTATCTACTGTATGCAAATGATGAGTCAT
GCCAGTAAAGCAATGCTGTTGGTTATGGATCCTATAAGTTTACTGATCCCTGTTTTGGAGAAGTAA

Protein sequence : 
MIADLIQRPLLTYTLLLPRFMACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIEVDAFTLMLLIGKEIILG
LLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFSGGAFLSLLSALFHSYVNWPVAS
FFPAVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSH
ASKAMLLVMDPISLLIPVLEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscT AAO18038.1 LscT Virulence TTSS locus Protein 1e-50 71

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPA_CD0016 YP_636808.1 type III secretion protein VFG0396 Protein 5e-76 100
YPA_CD0016 YP_636808.1 type III secretion protein VFG0186 Protein 6e-44 69