Gene Information

Name : YPA_CD0011 (YPA_CD0011)
Accession : YP_636803.1
Strain :
Genome accession: NC_008122
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 6927 - 8186 bp
Length : 1260 bp
Strand : -
Note : -

DNA sequence : 
GTGAGTTGGGTCTGTCGTTTTTATCAAGGGAAGCACCGTGGTGTTGAAGTTGAGCTTCCTCATGGGCGCTGTGTTTTTGG
TTCAGACCCGTTGCAGTCAGATATTGTTCTTTCTGACAGCGAAATAGCACCCGTGCATTTAGTGCTGATGGTCGATGAAG
AAGGTATTCGCCTAACTGATTCTGCAGAACCTCTACTACAAGAAGGGCTTCCCGTGCCGTTGGGGACTCTTCTTCGCGCG
GGCTCTTGTCTGGAAGTAGGTTTTTTACTGTGGACATTTGTCGCCGTAGGGCAACCTTTGCCAGAGACGTTACAGGTTCC
CACGCAGAGAAAAGAGCCAACCGACAGGTTACCTCGTTCACGACTTGGGATTGGGCTTGGAGTTCTTTCTTTATTGTTGC
TTTTGACTTTTTTGGGGCTGCTAGGGCACGGATTGTGGCGCGAGTATAACCAGGATGGACAACTTGTTGAGCAAGAAGTA
CGGCGCTTGCTGGCAACTGCTGCTTACAAGGATGTCGTTTTAACATCGCCCAAAAAAGAGGGTGAACCTTGGTTATTAAC
TGGTTATATCCAGGATAATCATGCCCGCTTGTCACTGCAAAATTTTCTTGAGAGCCATGGCATTCCATTCCGGCTTGAAC
TGCGCAGCATGGAAGAACTGCGTCAGGGGGCAGAATTCATCCTGCAACGGTTGGGATACCATGGAATTGAGGTTTCTTTA
GCACCGCAAGCGGGATGGCTACAATTGAATGGGGAAGTGTCAGAGGAAATACAAAAGCAAAAAATTGATAGCCTGCTGCA
AGCTGAAGTGCCAGGGCTGCTCGGTGTAGAAAGTAAAGTGCGGATTGCCGGTAATCAACGCAAGCGGCTTGATGCATTAC
TTGAACAATTTGGTCTGGATTCAGATTTCACTGTAAATGTTAAAGGTGAGCTGATTGAATTACGCGGGCAAGTCAATGAT
GAAAAATTGAATTCATTTAATCAACTACAACAAACTTTTCGCCAAGAGTTTGGCAATCGACCTAAATTAGAACTGGTCAA
TGTCGGGGGGCAACCCCAGCATGATGAATTGAATTTCGAGGTGCAAGCTATCTCGTTAGGGAAAGTGCCTTATGTGGTAC
TCGACAATCATCAACGCTATCCAGAAGGTGCCATACTTAACAATGGCGTTCGTATTCTGGCTATTCGACGCGATGCGGTG
ATTGTGAGTAAAGGAAAACGGGAATTTGTGATCCAACTCAATGGAGGTAAACCTCGATGA

Protein sequence : 
MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRA
GSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYNQDGQLVEQEV
RRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSL
APQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVND
EKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAV
IVSKGKREFVIQLNGGKPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscD AAO18032.1 LscD Virulence TTSS locus Protein 4e-82 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPA_CD0011 YP_636803.1 type III secretion protein VFG0403 Protein 0.0 100
YPA_CD0011 YP_636803.1 type III secretion protein VFG0212 Protein 4e-75 43