Gene Information

Name : MXAN_5647 (MXAN_5647)
Accession : YP_633786.1
Strain : Myxococcus xanthus DK 1622
Genome accession: NC_008095
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 7014802 - 7015458 bp
Length : 657 bp
Strand : -
Note : identified by match to protein family HMM PF00813; match to protein family HMM TIGR01102

DNA sequence : 
ATGTCGTACGCGGGCAGCCCTCTGTCGATGATGGGCATGCTCGCGGTGATGTCGCTGCTGCCGTTCGCGGTGCTGATGCT
GACGAGCTTCTCGAAGATTGCCGTCGTATTGTCGCTGGCCCGCTCGGCCATGGGCACGCAGCAGGCGCCGCCTACCATCG
TGCTCACGGGCCTGGCGGCGGTGCTCACCGGGCACATCATGGCTCCGGTGATGGAGCGCATGTACGACGCCGGGCAGGTG
GCCTACGCGGAGGTGGCGTCGGGCTCCGGCGCGGAGATGCTCTCCGCCGCGAGCCGCGTGTCGGAGCCGCTGCGCGCCTT
CCTGATCAAGCACGGGAGCGCTGAGGAGCGCGCGCGCTTCGTGGACCTGGCGCGCGAGCTACGTCCGGTGGAGGAGATGG
ACGCGGTGCGGGAGACGGACCTCTTCATCGTCATTCCTGCCTTCGTCATCACCGAGTTGAAGGAAGCCTTCCAGATTGGC
TTCCTCGTCTTCCTCCCGTTCCTCGTGCTGGACATGGTGATTGCCAACGTGCTGCTCGCGCTGGGCATGCAGACGCTGTC
ACCCAGCCAGGTGAGTCTGCCCTTCAAGATTCTCCTCTTCGTCGCCGTGGATGGTTGGTCGCTGCTCGCGCGGGGCCTCA
TCCTCGGCTACCGGTGA

Protein sequence : 
MSYAGSPLSMMGMLAVMSLLPFAVLMLTSFSKIAVVLSLARSAMGTQQAPPTIVLTGLAAVLTGHIMAPVMERMYDAGQV
AYAEVASGSGAEMLSAASRVSEPLRAFLIKHGSAEERARFVDLARELRPVEEMDAVRETDLFIVIPAFVITELKEAFQIG
FLVFLPFLVLDMVIANVLLALGMQTLSPSQVSLPFKILLFVAVDGWSLLARGLILGYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-44 46
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-44 46
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-44 45
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-34 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-34 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-34 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-44 45
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-44 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-44 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-44 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-44 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-34 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-35 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-29 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-30 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-33 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 9e-34 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-33 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-32 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-27 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-27 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MXAN_5647 YP_633786.1 type III secretion system protein VFG0044 Protein 2e-41 45
MXAN_5647 YP_633786.1 type III secretion system protein VFG0394 Protein 4e-36 45
MXAN_5647 YP_633786.1 type III secretion system protein VFG2338 Protein 1e-37 43
MXAN_5647 YP_633786.1 type III secretion system protein VFG2494 Protein 4e-39 42
MXAN_5647 YP_633786.1 type III secretion system protein VFG0519 Protein 5e-34 41
MXAN_5647 YP_633786.1 type III secretion system protein VFG0188 Protein 1e-35 41