Gene Information

Name : hsfA (MXAN_5364)
Accession : YP_633514.1
Strain : Myxococcus xanthus DK 1622
Genome accession: NC_008095
Putative virulence/resistance : Virulence
Product : DNA-binding reponse regulator HsfA
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 6677567 - 6679024 bp
Length : 1458 bp
Strand : -
Note : identified by similarity to GB:AAK82998.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199

DNA sequence : 
GTGAACCAAGTCAAGCGCGCCAAAGTCCTCGTCGTGGATGACGACTCCGTCGTCCTCAAGGCCGTGACGCAGATTCTCCA
GCGCGAGGGCCACCCGGTGGTGGCCATTGACGACGCGGTGGAGGGCCTGGCGGCCGCGAAGGATCCGACCATCGACGTGG
TCGTCCTCGACATCAAGATGCCCAACCTGTCCGGCATGGACCTGCTGCGCGGCATCAAGGCCGACCGCCCGGACGTGGAG
GTCATCATGATGACGGCCTTCGCCACCGTGGAGACGGCGGTGGAGGCGGTGAAGGCGGGGGCGTACGACTACCTCACCAA
GCCCTTCGAGAACATCGACGAGGTCAGCCTCACGGTGGCCAAGGCGGCCGAGCGCAAGGCGCTCAAGGACCGCACCCGCG
CGCTGGAGGAGGCCCTCACGGTCCGCAGCCAGTTCGAGGACCTCATCGGCCAGTCCACGCAGATGCGCTCCGTCTTCAAG
CTGGTGGAGACGGTGAGCCACTCCACCGCCACGGTGCTCATCCAGGGGGAGAGCGGCACCGGCAAGGAGCTGGTGGCCCG
CGCCATCCACTACCGCAGCGCGCGCAAGGACAAGCCCTTCGTGGCGGTCAACTGTTCGGCGCTGACGGAGACGCTGCTGG
AGAGCGAGCTCTTCGGCCACGTGAAGGGCAGCTTCACCGGCGCCACCGGCAACAAGAAGGGCCTCTTCGAGGCGGCTGAC
GGCGGCACCATCTTCCTGGACGAAATTGGCGACGTGCCCCCGGCCACCCAGGTCCGCCTGCTGCGCGTGCTCCAGGAAGG
GGAAGTCAAACGCGTGGGCGCCAACGAGCCGGTGAAGGTGGACGTGCGCGTCATCGCCGCCACCCACGTGGACCTGTCCC
GCGCCAAGGAGCAGGGCAAGTTCCGCGAGGACCTCTTCTACCGCCTCAACGTCATCACCATCGACCTGCCGCCCCTGCGT
GACCGGCCCGAGGACGTGCCCCTGCTGGCGCACCACTTCCTCAAGCTCTACGCCTCCAAGGCGGACAAGAAGGTGACGGG
CATCTCCCCGCGCGCCATGGAAGCCCTCACCTGCAACCGGTGGACGGGCAACGTGCGTGAGCTGGAGAACGTCATCGAGC
GCGCGGTGGTGCTGACGGGCAACGAGGTCATCGACGTGGAGGACCTGCCGCCGGGCTTCCAGTCCGCGCCGCAGCCGGAC
TCCACGGTGGAGGTGTTCAGCCTGGCACACCTGCCGTACGCCCAGGCCAAGCGCCTGGCGATGCGTGCCTTCGAGCGCCG
CTACCTGTCCGCCCTGCTGGAGAAGAACAACCAGAACGTCTCCAGCGCCGCGCGCGCGGCGGGCGTGGACCGCTCCAACT
TCCGTCGTCTGCTCAAGCAGTACGAGGTGGCCGGCCGGTCCATGAAGCCCCGCGTGGTCTCCCAGGACGACGGCGAGGCG
CTGGAAGCCGCGTCCTGA

Protein sequence : 
MNQVKRAKVLVVDDDSVVLKAVTQILQREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDVE
VIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEALTVRSQFEDLIGQSTQMRSVFK
LVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAAD
GGTIFLDEIGDVPPATQVRLLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLR
DRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLTGNEVIDVEDLPPGFQSAPQPD
STVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEKNNQNVSSAARAAGVDRSNFRRLLKQYEVAGRSMKPRVVSQDDGEA
LEAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-49 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-49 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hsfA YP_633514.1 DNA-binding reponse regulator HsfA BAC0467 Protein 2e-72 50
hsfA YP_633514.1 DNA-binding reponse regulator HsfA BAC0089 Protein 3e-89 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hsfA YP_633514.1 DNA-binding reponse regulator HsfA VFG1214 Protein 4e-59 44
hsfA YP_633514.1 DNA-binding reponse regulator HsfA VFG1249 Protein 7e-58 43
hsfA YP_633514.1 DNA-binding reponse regulator HsfA VFG0116 Protein 6e-56 41