Gene Information

Name : MXAN_2448 (MXAN_2448)
Accession : YP_630668.1
Strain : Myxococcus xanthus DK 1622
Genome accession: NC_008095
Putative virulence/resistance : Virulence
Product : FliQ/MopD/SpaQ family protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1987
EC number : -
Position : 2855289 - 2855552 bp
Length : 264 bp
Strand : +
Note : identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402; match to protein family HMM TIGR01403

DNA sequence :

ATGAATCAGCTCACGTTCATCACCCAGGAGGCCCTGTTCCTGGTGCTCGTCGCGTCGGCGCCGCCGGTGCTGATGAGTCT
GTTGGTGGGGTTCATCATCTCCCTGTTCCAGGCCACCACGCAGATCCAGGAGCAGACGCTCACCTTCGCGCCGAAGGTCG
TCGCCGTGTTCGGCGTCCTCGCATTGGCCGGCCCCTGGATTGGAAGCCAGTTGGTGCGCTTCACGTTCCACGTCTTCGAC
AGGTTCCCCGCGCTCATCAAATGA

Protein sequence :

MNQLTFITQEALFLVLVASAPPVLMSLLVGFIISLFQATTQIQEQTLTFAPKVVAVFGVLALAGPWIGSQLVRFTFHVFD
RFPALIK

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
lscS	AAO18039.1	LscS	Virulence	TTSS locus	Protein	8e-08	49
hrcS	NP_791221.1	type III secretion protein HrcS	Virulence	Hrp PAI	Protein	2e-08	48
hrcS	AAG33885.1	HrcS	Virulence	Hrp PAI	Protein	2e-08	48
hrcS	AAT96147.1	HrcS	Virulence	T-PAI	Protein	1e-08	48
hrcS	AAT96201.1	HrcS	Virulence	T-PAI	Protein	1e-08	48
hrcS	AAT96263.1	HrcS	Virulence	S-PAI	Protein	4e-08	47
hrcS	AAT96304.1	HrcS	Virulence	S-PAI	Protein	4e-08	47
hrcS	AAT96344.1	HrcS	Virulence	S-PAI	Protein	4e-08	47
hrcS	AAB06006.1	HrcS	Virulence	Hrp PAI	Protein	3e-08	47
hrcS	ABA47280.1	HrcS	Virulence	S-PAI	Protein	6e-08	46
hrcS	ABQ88360.1	HrcS	Virulence	Hrp PAI	Protein	2e-05	46
hrpO	AAB05076.1	HrpO	Virulence	Hrp PAI	Protein	2e-05	46
ysaS	AAS66847.1	YsaS	Not tested	SSR-1	Protein	8e-09	44
ssaS	NP_456108.1	putative type III secretion protein	Virulence	SPI-2	Protein	0.008	44
ssaS	NP_805091.1	type III secretion protein	Virulence	SPI-2	Protein	0.008	44
spaQ	AAS66866.1	SpaQ	Not tested	SSR-2	Protein	2e-09	43
ssaS	CAA68200.1	secretion system apparatus, SsaS	Virulence	SPI-2	Protein	0.007	42
ssaS	YP_216428.1	secretion system apparatus protein SsaS	Virulence	SPI-2	Protein	0.010	42
ssaS	NP_460385.1	type III secretion system apparatus protein	Virulence	SPI-2	Protein	0.010	42
escS	AFO66401.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	2e-05	42
escS	AFO66341.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	2e-05	42
escS	YP_003223489.1	T3SS structure protein EscS	Virulence	LEE	Protein	2e-05	42
escS	AAK26701.1	EscS	Virulence	LEE	Protein	2e-05	42
escS	YP_003232139.1	T3SS structure protein EscS	Virulence	LEE	Protein	2e-05	42
escS	AAL57528.1	EscS	Virulence	LEE	Protein	2e-05	42
escS	CAC81848.1	EscS protein	Virulence	LEE II	Protein	2e-05	42
unnamed	AAL06355.1	EscS	Virulence	LEE	Protein	1e-05	41
escS	CAI43888.1	EscS protein	Virulence	LEE	Protein	4e-05	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
MXAN_2448	YP_630668.1	FliQ/MopD/SpaQ family protein	VFG0187	Protein	8e-07	55
MXAN_2448	YP_630668.1	FliQ/MopD/SpaQ family protein	VFG0395	Protein	6e-08	52
MXAN_2448	YP_630668.1	FliQ/MopD/SpaQ family protein	VFG0043	Protein	2e-07	50
MXAN_2448	YP_630668.1	FliQ/MopD/SpaQ family protein	VFG2132	Protein	8e-10	48
MXAN_2448	YP_630668.1	FliQ/MopD/SpaQ family protein	VFG2454	Protein	4e-06	44
MXAN_2448	YP_630668.1	FliQ/MopD/SpaQ family protein	VFG0520	Protein	0.003	42
MXAN_2448	YP_630668.1	FliQ/MopD/SpaQ family protein	VFG1260	Protein	9e-08	42