|
Name : smpB (MXAN_2057) Accession : YP_630286.1 Strain : Myxococcus xanthus DK 1622 Genome accession: NC_008095 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 2388690 - 2389178 bp Length : 489 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGACATCCGGAGGGAAGTCAAAGGGAGTGGGCAGTGAGCCCGGCGTGAGAGTCATCGCGGAAAACCGTCGTGCGCGTTT CGACTACACGGTCGACGAAAAGGTGGAGGCCGGGCTGGCGCTCACGGGAAGCGAGGTGAAGTCTCTGCGAGACGGAATCG CCAATCTGTCGGACGCCTACGCGCTCCCCAAGGGGGACGAGCTCTTCCTGCTCAACGCGAACATCGGCTCCTACAAGGCG GCGAGCTTCTTCGACCACCTTCCCACTCGGGGTCGCAAGTTGTTGATGCACCGAGGAGAAATCGACCGTTGGACGGCGAA GGTGCGTGAGCGGGGTTATTCGATCATCCCGCTTGTGCTGTACTTCAGGAACGGCCGTGCCAAGGTGGAGCTGGGGCTCT GCCGGGGCAAGACGCATGAGGACCGGCGCCACGACATCAAGGAGCGGGAGACGAAGCGGGAGATGGACCGGGCGATGCGC CGACGTTGA Protein sequence : MTSGGKSKGVGSEPGVRVIAENRRARFDYTVDEKVEAGLALTGSEVKSLRDGIANLSDAYALPKGDELFLLNANIGSYKA ASFFDHLPTRGRKLLMHRGEIDRWTAKVRERGYSIIPLVLYFRNGRAKVELGLCRGKTHEDRRHDIKERETKREMDRAMR RR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-31 | 48 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 3e-28 | 47 |
