Gene Information

Name : HPAG1_0521 (HPAG1_0521)
Accession : YP_627262.1
Strain : Helicobacter pylori HPAG1
Genome accession: NC_008086
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 544274 - 544924 bp
Length : 651 bp
Strand : -
Note : -

DNA sequence : 
TTGGCGAAAGTGGAGGAGCTAGCTAAATTGATCAACAATAATAGTAGTAAAAAACTGAGAGGCTTTTTTTTGAAAGTTCT
CTTAAGTCTCGTTGTTTTCAGTTCGTATGGGTTAGCAAATGACGATAAAGAAGCCAAAAAAGAAGCGCTAGAAAAAGAAA
AAAACACTCCCAATGGGCTTGTTTATACGAATTTAGATTTTGATAGTTTTAAAGCGACTATCAAAAATTTGAAAGACAAG
AAAGTAACTTTCAAAGAAGTCAATCCCGATATTATCAAAGATGAAGTTTTTGACTTCGTGATTGTCAATAGAGTCCTTAA
AAAAATAAAGGATTTGAAGCATTACGATCCAATCATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGATTGAATG
TAGAATTACAGATCAATCCTGAAGTGAAAGACTTTTTTACTTTCAAAAGCATCAGCACGACCAACAAACAACGTTGCTTT
CTGTCATTACGCGGAGAAACAAGAGAAATTTTATGCGATGATAAGCTATATAATGTTTTATTGGCCGTATTCAATTCTTA
TGATCCTAATGATCTTTTGAAACATATTAGCACCGTAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGG
TATATCTATAA

Protein sequence : 
MAKVEELAKLINNNSSKKLRGFFLKVLLSLVVFSSYGLANDDKEAKKEALEKEKNTPNGLVYTNLDFDSFKATIKNLKDK
KVTFKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCF
LSLRGETREILCDDKLYNVLLAVFNSYDPNDLLKHISTVESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 4e-72 99
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 3e-73 99
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 9e-70 99
cagD AAF80210.1 CagD Virulence cag PAI Protein 2e-70 99
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 9e-72 98
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 2e-72 98
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 6e-71 98
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-72 98
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 4e-71 98
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-72 97
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-72 97
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-70 96
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-70 96
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-70 95
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-69 95
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-69 95
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-69 94
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-69 94
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-69 94
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-69 94
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-69 94
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-69 94
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-68 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPAG1_0521 YP_627262.1 cag pathogenicity island protein D VFG0304 Protein 3e-72 98