Gene Information

Name : HPAG1_0359 (HPAG1_0359)
Accession : YP_627100.1
Strain : Helicobacter pylori HPAG1
Genome accession: NC_008086
Putative virulence/resistance : Unknown
Product : transketolase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0021
EC number : 2.2.1.1
Position : 371207 - 373135 bp
Length : 1929 bp
Strand : -
Note : catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during expo

DNA sequence :
TTGATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAATGTGCTTCGCTTTTTGTGCGCGGACATGAT
AGATAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACCTAAACC
TAAACCCCACTAACCCTAAATGGCTCAACAGAGACAGGTTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGT
TTGTTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACA
CCCCGAATTGCACCACACCGAAGGCATTGAGATCACGACAGGCCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTA
GCATGGCGAGTCGATACGCTCAAAACCTTTTAGACAAAAAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGG
GATTTGCAAGAAGGCATTAGCTATGAGAGCGCTTCTTTAGCCGGGCACTTTCGCCTTGATAACCTCATCGTGATTTATGA
CAGCAACCAGATCAGCATTGAAGGCGCTATTGATATTAGTTTTAGCGAACAGGTTAAAACGCGTTTTTTAGCGCAAAATT
GGGAAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCCATAAACCC
ACGCTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTGTTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTT
AAATAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAACCCTGATGAAAGCTTTATCATTAGCCCAAAAAACA
AAATGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAGGCCTTATGGGAAAAATCCTTAAGCCCTAAAACAAAA
GAAAAAATCCATGCGTTAAAGGATTTTGATTTTAACGCCATCCATTACCCCACCTTTAAAAAAGGCGAATCTCTAGCCAC
AAGAGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTAGGGGGTAGCGCGGATCTAGCCC
CCTCTAACAACACGCAGTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCC
ATGGGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTA
CTTGATGCCCAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTCACGCATGACAGCATTGGCGTGG
GCGAAGACGGGGCGACGCACCAGCCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCGCATTTTTACGCTTTCAGGCCC
AGCGACGCTTTTGAAAATAAGGCTTGCATGCAAGTAGCGTTAAGTTTGAACGCTCCTAGCGCTCTTATTTTATCGCGCCA
GAATTTGCCCGTGCTAGATGAAGTCTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAACATGATGCTAAAGATCCCA
TTATCACGCTCGTTGCGAGCGGGAGCGAAGTCTCTTTAGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATTCCC
ACTCAAGTGGTGAGCGCACCATGTTTTGATTTATTGATAGAGCAAGATGAAAGCTATCTTAAAGAACTCTTTAAGGGTAA
AGTCTTAGTCATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGA
GCTCAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCGCTCAAGCTAAAAGATTACTC
AACGCATGA

Protein sequence :
MMRLSNADLERLKSMANVLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYS
LLHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASRYAQNLLDKKAISHKVYCLCGDG
DLQEGISYESASLAGHFRLDNLIVIYDSNQISIEGAIDISFSEQVKTRFLAQNWEVLECDGHDYQAIHNALEEAKKSHKP
TLLIAHTIIGKGAVGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKTK
EKIHALKDFDFNAIHYPTFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHA
MGAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPHFYAFRP
SDAFENKACMQVALSLNAPSALILSRQNLPVLDEVSKEQVLKGAYVKHDAKDPIITLVASGSEVSLALESAKMLERENIP
TQVVSAPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLL
NA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tktA AAO17218.1 TktA Not tested tcd island Protein 4e-97 42
APECO1_2641 YP_859417.1 transketolase Not tested Not named Protein 2e-87 41