|
Name : HPAG1_0106 (HPAG1_0106) Accession : YP_626847.1 Strain : Helicobacter pylori HPAG1 Genome accession: NC_008086 Putative virulence/resistance : Resistance Product : cystathionine gamma-synthase/cystathionine beta-lyase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0626 EC number : 2.5.1.48 Position : 110879 - 112021 bp Length : 1143 bp Strand : - Note : catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine and L-cysteine; or Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine DNA sequence : ATGCGCATGCAAACAAAACTAATCCATGGGGGCATTAGTGAGGATACGACAACGGGGGCGGTGAGCGTGCCTATTTATCA AACTTCCACCTACCGCCAAGACGCCATAGGCCACCATAAGGGTTATGAATACTCTCGCTCAGGCAACCCCACACGCTTTG CTTTAGAAGAACTCATCGCCGATTTAGAAGGGGGGGTTAAGGGGTTTGCTTTTGCCTCTGGACTAGCTGGGATCCACGCT GTTTTTTCCCTTTTACAATCAGGCGATCATGTGTTATTGGGCGATGATGTTTATGGGGGGACTTTTCGCTTGTTTAATAA AGTGCTTGTCAAAAATGGGCTTTCTTGCACCATCATAGACACTAGCGATCTATCCCAAATCAAAAAGGCTATCAAGCAAA ACACCAAAGCCCTTTATTTAGAAACCCCTAGTAACCCCTTGCTTAAAATCACGGATTTAGCGCAATGCGCGAGTGTTGCT AAAGATCATGGTTTGCTCACTATCGTGGATAACACCTTTGCCACCCCCTATTATCAAAACCCGCTTCTTTTGGGAGCGGA TATTGTGGTGCATAGCGGCACGAAATACTTAGGCGGGCATAGCGATGTGGTCGCTGGGCTTGTAACCACTAATAATGAAG CGCTATCCCAAGAGATCGCTTTTTTCCAAAACGCTATCGGTGGGGTTTTAGGCCCTCAAGACAGCTGGCTGTTGCAAAGA GGGATTAAAACGCTAGCATTACGCATGGAGGCCCATCAAAAAAACGCTCTTTGCGTGGCTGAGTTTTTAGAAAAACACCC TAAAGTAGAAAAGGTTTATTACCCGGGCTTGCCCACCCACCCTAATTACGAGCTAGCCAAAGCCCAAATGCGTGGCTTTA GCGGGATGCTCTCTTTCACTCTCAAAAATGACAGCGAGGCGACTCTTTTTGTAGAAAGCCTTAAATTATTCATTTTAGGC GAGAGTTTGGGCGGGGTGGAAAGTTTGGTAGGGATTCCGGCATTTATGACCCATGCGTGTATCCCTAAAGAACAACGAGA AGCTGCAGGGATTAGAGATGGCTTGGTGCGCTTGTCTGTGGGGATTGAGCATGAACAGGATTTGTTAGAAGATTTAGAGC AAGCGTTCGCTAAAATAGGCTAA Protein sequence : MRMQTKLIHGGISEDTTTGAVSVPIYQTSTYRQDAIGHHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHA VFSLLQSGDHVLLGDDVYGGTFRLFNKVLVKNGLSCTIIDTSDLSQIKKAIKQNTKALYLETPSNPLLKITDLAQCASVA KDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALSQEIAFFQNAIGGVLGPQDSWLLQR GIKTLALRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNYELAKAQMRGFSGMLSFTLKNDSEATLFVESLKLFILG ESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAR0460 | YP_039909.1 | Cys/Met metabolism PLP-dependent enzyme | Not tested | vSa¥á | Protein | 7e-97 | 54 |
| SAS0418 | YP_042545.1 | Cys/Met metabolism PLP-dependent enzyme | Not tested | vSa¥á | Protein | 4e-98 | 54 |
| metB | YP_281510.1 | cystathionine beta-lyase | Not tested | Not named | Protein | 3e-72 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPAG1_0106 | YP_626847.1 | cystathionine gamma-synthase/cystathionine beta-lyase | BAC0207 | Protein | 1e-63 | 44 |
