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Name : smpB (Ldb1832) Accession : YP_619546.1 Strain : Lactobacillus delbrueckii ATCC 11842 Genome accession: NC_008054 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1557166 - 1557627 bp Length : 462 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGAAACAAAAAGCCAAGGATGAAAATGTCCTCGCGCAGAACCGGCAAGCCCGGCATGATTATTTCATCAAGGATACTTA TGAAGCCGGGATTGCTTTGACGGGGACGGAGATCAAGTCAGTCAGAGCCCGGCACGTGACCTTGCGTGACGGCTACGTGC AGATCATCAACGGGTCGGCCTTCCTGGAAAATGTTCATATCGATGAATATAAGGAAGGCAACCGCTACAACCATGACCCG CTGAGAAGCCGCAGACTGCTTTTGCACAAGAAAGAAATCGCCAAACTGGCCGATGTGAAGGCCCAAAAGGGGATGACCAT CGTGCCGCTCAAGGTCTACTTGAAGCACGGCTTTGCCAAGGTTTTGATTGGCGTAGCGCAGGGTAAGAAGGAATACGACA AGCGCGAAACGATCAAGAAGCGCGACCAGGACCGGGAACTGCGCAGAAAATACAGAATTTAA Protein sequence : MKQKAKDENVLAQNRQARHDYFIKDTYEAGIALTGTEIKSVRARHVTLRDGYVQIINGSAFLENVHIDEYKEGNRYNHDP LRSRRLLLHKKEIAKLADVKAQKGMTIVPLKVYLKHGFAKVLIGVAQGKKEYDKRETIKKRDQDRELRRKYRI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 9e-38 | 60 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 7e-27 | 45 |
