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Name : Sala_0722 (Sala_0722) Accession : YP_615776.1 Strain : Sphingopyxis alaskensis RB2256 Genome accession: NC_008048 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 728289 - 729569 bp Length : 1281 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCACGACATCCGCCTGATCCGCGACAACCCGCACGCCTTCGACGCCGGCCTCGCGCGCCGCGGCCTTGCGCCGCTGTC CGCCGAAATCCTCGCCGCCGATGCCGAACTTCGCGCGCTGCAAACCGACATCCAGGCCGCACTCGCGCGCCGCAACGAAG CCTCGAAACTCATCGGGCAGGCGATGGCCGCCGGCGACAAGGACAAGGCGGAGGCGCTGAAGGCCGAGGTCGCCGCGCTG AAGGCCGCCCTCCCGGCCAGGGAAGAGGCCGAGCGCGCGCAGCTCGCGGCGCTCCACGACCGCCTCGCCGCGCTCCCCAA CCTCCCCGCCGACGACGTGCCCGATGGCGAGGACGAGGCGGGCAATGTCGAACTGTCGCGCTGGGGCACGCCGCGCAGCT TCGATTTCACGCCGCTGGAACATGCCGATTTCGCCCCCGCGCTCGGTCTCGATTTCGAAACGGCGGCGAAGATGTCGGGC GCACGCTTCGCCTTTCTCAAAGGCCCGATGGCGCGGCTCGAACGCGCGCTCGGCCAGTTCATGCTCGACAGGCAGACGAT CGAGGCGGGATACACCGAATGTGCGACGCCGCTGCTCGTCCGCGACGACGCCGCTTTCGGAACGACGCAGCTTCCCAAGT TCCGCGAGGATCTGTTCCAGACCACCGACGGCCTCTGGCTCATCTCGACCTCCGAAATGAGCCTCACAAATGCGGTACGC GAGCAGATATTGGCCGAGGCCGATCTGCCGATCCGCATGACCGCGCTCACCCCCTGCTTCCGTTCCGAAGCGGGGTCGGC GGGGCGCGACACGCGCGGCTATATCCGCCAGCACCAGTTCTGGAAGGTCGAGCTGGTCTCGATCACCCGCCCCGAAGACA GCGACGCCGAACTCGAACGCAAGACGCGCGCCGCCGAGAGCATCCTCGAAGCGCTCGAATTGCCCTATCGCAAGATGCTG CTCTGCGCCGGCGACATGGGCTTTGCCGCACGCAAGACCTACGATCTCGAAGTCTGGCTGCCCGGCCAGAACGCCTATCG CGAGATTTCGAGCTGTTCGAACTGCGGCGATTTCCAGGCACGCCGCATGAACGCGCGCTTCCGGCGAGAGGGCGGCAAGG GCAATGAGTTCGTCCACACATTGAACGGCTCGGGTCTTGCGGTCGGGCGCACGCTCGTCGCGATCCTCGAAAATTACCAG CAGGCCGACGGCAGCGTCGACATTCCGGCGGCGCTGCTGCCCTATATGGGCGGGATCACCCGGCTGACGCCCCTGGGTTG A Protein sequence : MHDIRLIRDNPHAFDAGLARRGLAPLSAEILAADAELRALQTDIQAALARRNEASKLIGQAMAAGDKDKAEALKAEVAAL KAALPAREEAERAQLAALHDRLAALPNLPADDVPDGEDEAGNVELSRWGTPRSFDFTPLEHADFAPALGLDFETAAKMSG ARFAFLKGPMARLERALGQFMLDRQTIEAGYTECATPLLVRDDAAFGTTQLPKFREDLFQTTDGLWLISTSEMSLTNAVR EQILAEADLPIRMTALTPCFRSEAGSAGRDTRGYIRQHQFWKVELVSITRPEDSDAELERKTRAAESILEALELPYRKML LCAGDMGFAARKTYDLEVWLPGQNAYREISSCSNCGDFQARRMNARFRREGGKGNEFVHTLNGSGLAVGRTLVAILENYQ QADGSVDIPAALLPYMGGITRLTPLG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 6e-87 | 61 |
