Gene Information

Name : fliP (Sala_2926)
Accession : YP_617964.1
Strain : Sphingopyxis alaskensis RB2256
Genome accession: NC_008048
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 3072781 - 3073551 bp
Length : 771 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGTCGATTGACGGCCGCTTCTGGCTGCGCGCCGCGGCGCTGACTGGCGGGGCAGGGCTGCTTTGCGCCGCGACGCCGGC
GTTCGCGCAGGCCGCCGACGGGCTCAGCCGCGCGGTGAACGAGATCGGCGGCGACGGACGGCCGCTGAGCCTGTCGCTCC
AGATCCTCGTCCTGATGAGCCTCTTGACGGTGCTGCCGTCGCTGCTGCTCATGATGACCAGCTTCACGCGCATCATCATC
GTGCTGTCGATCCTGCGCCACGCGCTCGGGCTGCAACAGACGCCGCCCAACCAGGTGCTCGTGGGTCTCAGCCTCTTTCT
CTCGCTCTTCGTGATGCAGCCCGTCATCAGCGAAGTGAACCGCGTCGCGATCGAACCTTATGGCCAGGAACAGATCGACA
TCGGCGAGGCGGTGTCGCGTTCGGGCGACGCGCTCCACGGCTTCATGATGAAACAGACGCGCAAGACCGACCTGATGATG
TTCGCGAAGATCGCCAGGGCGCCGGCCTATGCCAGCCCCAAGGACGTGCCCTTTTCGATCCTGCTTCCCGCCTTTGTCAC
CAGCGAGCTCAAGACCGCCTTCCAGATCGGCTTCCTCATCTTCCTGCCCTTTCTCGTCATCGACCTGATCGTCGCCTCGG
CGCTGATGTCCTTGGGTATGATGATGCTGTCGCCGACGATCATCTCGATGCCCTTCAAGCTGCTGCTTTTCGTTCTCGTC
GACGGCTGGGCGCTGACGATGGGTTCGCTCGCCGCCTCCTTCGGAACATAG

Protein sequence : 
MSIDGRFWLRAAALTGGAGLLCAATPAFAQAADGLSRAVNEIGGDGRPLSLSLQILVLMSLLTVLPSLLLMMTSFTRIII
VLSILRHALGLQQTPPNQVLVGLSLFLSLFVMQPVISEVNRVAIEPYGQEQIDIGEAVSRSGDALHGFMMKQTRKTDLMM
FAKIARAPAYASPKDVPFSILLPAFVTSELKTAFQIGFLIFLPFLVIDLIVASALMSLGMMMLSPTIISMPFKLLLFVLV
DGWALTMGSLAASFGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-17 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-17 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-17 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-12 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-09 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-09 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 4e-12 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-10 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-10 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-16 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-20 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-21 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-17 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-17 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-17 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 8e-21 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 8e-21 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-21 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-21 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_617964.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-42 63
fliP YP_617964.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-39 61
fliP YP_617964.1 flagellar biosynthesis protein FliP VFG2016 Protein 4e-40 60
fliP YP_617964.1 flagellar biosynthesis protein FliP VFG2338 Protein 7e-39 58
fliP YP_617964.1 flagellar biosynthesis protein FliP VFG0188 Protein 8e-20 43
fliP YP_617964.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-17 41
fliP YP_617964.1 flagellar biosynthesis protein FliP VFG1773 Protein 2e-16 41
fliP YP_617964.1 flagellar biosynthesis protein FliP VFG0394 Protein 2e-19 41