|
Name : smpB (Sala_1730) Accession : YP_616776.1 Strain : Sphingopyxis alaskensis RB2256 Genome accession: NC_008048 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1821322 - 1821807 bp Length : 486 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGTCCGTCCGCAGTCTGCCGCAGAGTTCGACAAGAAAAAGGTCGTCGCCGAGAACCGGCGCGCGCGCTTTGACTATGC CATCGAACAGGTGTTCGAGGCCGGAATCGCGTTGCAGGGGACCGAGGTCAAGTCGCTGCGCTTCGGCGAGGGGACGATCG CCGAAAGCTATGCCGAAGTGAACGGCGGCGAGGTGTGGCTGATCAACGCCAATATCCCTGAGTTCAGTCATGGCAACCGC TTCAACCACGAGCCGAAACGACCGCGCAAACTGCTGCTCAACTGGCGCGAGATCAACAAGCTGCACGCAGGCGTGGCCCG GCAGGGGATGACGCTCGTTCCCTTGAGCGTCTATTTCAACAGCCGCGGCCGCGCGAAGGTCGAACTGGCGCTGGCGAAAG GCAAGAAGGCGCACGACAAGCGCGAATCGATCAAGGAGCGCGACTGGAAGCGCGACAAGCAAAGATTGCTGAAGGACCGC GGATGA Protein sequence : MVRPQSAAEFDKKKVVAENRRARFDYAIEQVFEAGIALQGTEVKSLRFGEGTIAESYAEVNGGEVWLINANIPEFSHGNR FNHEPKRPRKLLLNWREINKLHAGVARQGMTLVPLSVYFNSRGRAKVELALAKGKKAHDKRESIKERDWKRDKQRLLKDR G |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 8e-29 | 53 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 5e-30 | 52 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 5e-26 | 46 |
