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Name : TM1040_0703 (TM1040_0703) Accession : YP_612698.1 Strain : Ruegeria sp. TM1040 Genome accession: NC_008044 Putative virulence/resistance : Unknown Product : RNA binding S1 Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 752089 - 754533 bp Length : 2445 bp Strand : + Note : PFAM: RNA binding S1: (4.1e-24); SMART: Resolvase, RNase H-like fold: (8.8e-34); KEGG: sil:SPOA0306 S1 RNA binding domain protein, ev=0.0, 78% identity DNA sequence : ATGTTCCGGACCGCTAAGACGGTACTCCGGCCTCAGTGGTTGCGCATCATCGTGGCCGACGCCAAAGCAAAGGAGCAGCA GGTTTTGGATACGACCCTTCGAATTGCGCGGAAGATTTCCGAAGAAATCGGATCATCGGTACAGCAGGTGAACGCAGCCG TGGGGCTCTTGGACGAGGGGGCGACTGTACCTTTTGTCGCGCGCTACCGCAAAGAGGTGACCGGGGGCCTTGATGACACG CAATTGCGGACCTTGTCGGAGCGGCTGGAATACTTGCGCGAGCTGGAAAAGCGACGGGCCGCGATCCTGGAGACGATTAC GCAGCAAGACAAGTTGACCGATGATCTGGCGGCATCGATTGCCAAGGCGGAGACCAAGGCGCAGCTCGAAGACATCTATC TCCCCTTCAAACCCAAGCGTCGCACCAAGGCGATGATCGCGCGCGAAAACGGGCTTGAGCCTCTTCTGGAGGCTATTCTC GCGGATCGCTCTGCTGATCCCGAGGTTTTGGCCGCGAACTACCTCTCCGGGGAAGTGGCAGACACAAAGACCGCTTTGAA CGGTGCACGTGATATTCTCACCGAGCGTCTCACCGAGAATGCCGAGCTTTTGGGGCGGCTACGTAATTTCATGCAGTCTG AAGCCATTTTGCGATCCAAAGTGGTCGAAGGACAGGAGCAGGCGGGTGCCAAATTCTCGGATTACTTCGATCATTCCGAG GCTTGGAAAACCACCCCGTCGCATCGGGCTCTGGCGATGCTGCGCGGCTCCAACGAGGGCGTGCTGACGCTCGATATTGC CCCACCGGGCGAAGAGGGGGTCACGCGAGCCGAAGAAATGGTCGCCGCTGTTCTGGAGGTGCGAAGCTCGGCTCCGGGCG ACAAGTGGCTGCGCAAAGCGGCTGGTTGGACCTGGCGGGTCAAACTGTCGCTGTCGATGATGCTGGAGCTGATGGGCGAT CTGCGCAGCCGGGCGCAGGACGAAGCTATTTCGGTTTTTGCGCGCAATCTCAAGGATTTGCTCTTCGCTGCCCCAGCCGG TGCGCGGCCGACCCTCGGGCTGGACCCGGGCATTCGCACCGGCGTCAAGGCCGCAGTGGTTGATGCGACCGGGAAATTGG TGGCCACAGAGACCCTCTATCCGTTCCAGCCGAAAAACGATCTGCGTGGTGCGCAGGTCTCCATTCTGAAGCTCATCGCC GAGCACGGGGTTGAGCTGATCGCGATCGGCAATGGTACGGCCAGCCGCGAGACCGAGCGCATGGTCGCCGAAGTTCTGAA AAACCTGCCCGCCAAGGTCAAAGCGCCGACCAAGGTGGTGGTTTCTGAGGCGGGCGCCTCGGTCTATTCCGCCTCCGAAC TGGCTGCGCGTGAATTCCCGGATCTTGACGTCAGCTTGCGTGGTGCGGTTTCGATTGCGCGGCGCCTTCAGGATCCGCTA GCGGAACTGGTCAAGATTGAGCCCAAGAGCATTGGGGTCGGACAATATCAGCATGACGTGGACCAGCATAAGCTTTCCAA GTCACTCGAAGCCGTGATCGAAGATGTGGTGAACGCGGTTGGTGTTGATCTCAACATGGCGTCCGCACCGCTTTTGGCAC ATGTCTCGGGTCTTGGTCCCGGCCTTGCCGAAGCCATCGTGGCGCATCGCGACCTCAACGGCGCTTTCAAGACCCGCAAA GAACTCTTGAAGGTTGCGCGTCTTGGCCCCAAGGCGTTTGAGCAATGTGCAGGTTTCCTGCGTATCCAAGGCGGCAAAGA GCCTCTGGACGCCTCTGCGGTCCACCCCGAAAGCTATGATGTCGCGCGCAAGATCGTGAGCGCCTGCGGCCGCGATATTC GCGAGATCATGGGGGACGCCACGGCGCTGAAATCCCTCCGGGCTGAGCAATTCGTCTCTGGTGAGGTCGGCCTGCCCACC GTACATGACATCTTTGCGGAGCTGGAAAAACCGGGGCGTGATCCACGTCCCTCTTTCGTCACCGCAAGCTTTACCGATGG CGTGGAGGAGATCACTGATCTCAAACCCGGTATGGTTCTTGAGGGCACAGTGACCAATGTTGCGGCCTTCGGGGCCTTCG TGGACATTGGTGTGCACCAAGACGGTCTTGTGCATGTGAGCCAGCTGGCCGACAAATTCGTCAAGGACCCGCATGAGATT GTGAAAACCGGTCAGGTGGTCAAGGTCACGGTGGTCGAGGTGGACGTGCCGCGCAAACGCATCGGCCTGACCATGAAAAA GGACGGTGGCGCATCTGCGCGAGAGGATCGCGCAGGCCGTGGGCCCTCCCAGAATGCAGCGCGCGGTGGTGCCAAAGGGC GCAATTCCTCCTCACCCAAACGCCACGGCTCTGCCGCGCCCAGAGGCAAATCCGCCTCGGATAACGGCGCAACGGGCAAT GGCGCATTGGGGGCCGCCTTGATGGATGCCTTCAAGAAGAAATAG Protein sequence : MFRTAKTVLRPQWLRIIVADAKAKEQQVLDTTLRIARKISEEIGSSVQQVNAAVGLLDEGATVPFVARYRKEVTGGLDDT QLRTLSERLEYLRELEKRRAAILETITQQDKLTDDLAASIAKAETKAQLEDIYLPFKPKRRTKAMIARENGLEPLLEAIL ADRSADPEVLAANYLSGEVADTKTALNGARDILTERLTENAELLGRLRNFMQSEAILRSKVVEGQEQAGAKFSDYFDHSE AWKTTPSHRALAMLRGSNEGVLTLDIAPPGEEGVTRAEEMVAAVLEVRSSAPGDKWLRKAAGWTWRVKLSLSMMLELMGD LRSRAQDEAISVFARNLKDLLFAAPAGARPTLGLDPGIRTGVKAAVVDATGKLVATETLYPFQPKNDLRGAQVSILKLIA EHGVELIAIGNGTASRETERMVAEVLKNLPAKVKAPTKVVVSEAGASVYSASELAAREFPDLDVSLRGAVSIARRLQDPL AELVKIEPKSIGVGQYQHDVDQHKLSKSLEAVIEDVVNAVGVDLNMASAPLLAHVSGLGPGLAEAIVAHRDLNGAFKTRK ELLKVARLGPKAFEQCAGFLRIQGGKEPLDASAVHPESYDVARKIVSACGRDIREIMGDATALKSLRAEQFVSGEVGLPT VHDIFAELEKPGRDPRPSFVTASFTDGVEEITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADKFVKDPHEI VKTGQVVKVTVVEVDVPRKRIGLTMKKDGGASAREDRAGRGPSQNAARGGAKGRNSSSPKRHGSAAPRGKSASDNGATGN GALGAALMDAFKKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 58 |
