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Name : TM1040_2875 (TM1040_2875) Accession : YP_614869.1 Strain : Ruegeria sp. TM1040 Genome accession: NC_008044 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 3042910 - 3045549 bp Length : 2640 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : ATGTCTGTCACGCCGATGATGGCGCAATATCTCGAGATCAAGGCGCAATACCCGGATGCGCTCCTGTTTTATCGCATGGG CGATTTCTACGAGATGTTCTTTGAGGATGCGGTCAACGCGGCCGAGGCGCTTGATATCGCGCTCACAAAACGGGGCAAAC ACGAAGGCGAGGATATTCCCATGTGCGGCGTTCCCGTGCATGCCGCCGAAGGGTATCTTTTGACCCTGATCCGCAAAGGG TTTCGCGTTGCCGTGGGCGAGCAGCTTGAAAGCCCCGCAGAAGCCAAGAAACGTGGTTCCAAATCCGTTGTGAAACGTGA CGTGGTACGCCTGGTGACGCCCGGCACGCTTACCGAGGATTCCCTGCTCGAAGCGCGTCGCCATAACTTCCTGGTGGCCT ATTCCGAACTGCGTGACCAGGCCGCCCTGGCTTGGGCCGATATATCAACCGGCGCGTTTCACGTCATGCCCGTCGCCCGC GTGCGTCTCAGTCCAGAGCTTGCTCGTCTTGCCCCATCAGAGCTGATCGTTGCAGATGGCCCCATCTTTGACGCCACATT GCCTTTGGCAGAGGAGTACAAAATCCCGCTCACGCCTCTTGGGAAGGCAAGCTTTGACAGTACCGCTGCAGAAAAACGTC TCTGCCATCTGTTCAATGTGAGCGCGCTCGATGGTTTTGGCACCTTCAACAGGGCCGAAATCTCGGCCATGGGCGCTGTC GTGGACTATCTGGAGATCACGCAGAAAGGCAAACTGCCCCTGTTGCAGCCTCCACTCCAGGAATCCGAGGATCGGACAGT CCAGATCGACGCCTCAACCCGGCGTAACCTCGAACTCACCCGCTCGCTATCTGGCGGACGTGCTGGATCTCTTTTGTCTG TTGTGGATCGCACCGTCACTCCGGGCGGCGCCCGACTGCTCGAACAACGCCTTTCCAGCCCCTCTCGCAATCTCGACGTG ATTTCCGCGCGCCTCGAGGCTCTGGATACGATCGTCGAAGACCCCATTCGCTGTGATACGTTGCGTGGCCTTCTCCGCAA AACACCTGATATCGACCGCGCGCTTTCGCGCCTTGCGCTTGATCGGGGCGGACCACGCGACCTCGCTGCCATTCGCAACG CCCTGAGCCAAGGCGAAGACATCGAACGGGCACTACAGGATCCGGATCTGCCGACCCTGCTGCGCGATGCGGCACACTCC CTCGAAGGGTTCCAAGATCTGCTCTCCCTCCTCGATGCCGCCTTGATCGCCGAGCCCCCCCTGCTGGCCCGTGATGGCGG CTTTATCGCAGCAGGCTATGATCGCGAACTCGATGAAGCGCGCACCCTCAGAGATGAGGGCCGCTCTGTCATCGCAGGTC TGCAGAAAAAATATGCAGAGCATACGGGAATCAGCTCACTCAAGATCAAGCACAACAATGTGCTTGGCTATTTCATTGAA ACCACATCGACGCACGCCGCAAAGATGCAGTCAGCGCCGATGTCAGACACCTATATTCATCGTCAAACCACCGCAAACCA AGTCCGTTTCACAACCGTGGAACTAAGCGAAATCGAGACCAAGATTCTGAACGCCGGAAATCTGGCGCTTGAGATCGAAA AACGGCTCTATCAAAGGCTTTCTGGCGCTATTCTAGACAGCGCTGCGCGGCTCAATCAGGCCGCGCGCGGGTTTGCCGAG ATCGATTTGGTCACCGCATTGGCAGATCTTGCACGCGCGGAAAACTGGACCCGACCGCGCGTTGATACATCTCGTGCGTT TCACGTGGACGGCGGACGTCATCCGGTTGTGGAACAAGCGTTGCGCCATCAAGGCGGTGACAGCTTTGTGGCGAATGACT GTGATCTCAGCCCTCAAGACGGAGCAGCGATCTGGCTTCTCACCGGGCCCAACATGGCCGGTAAATCGACCTTCTTGCGT CAGAACGCCCTGATTGCCGTGCTTGCTCAAATGGGCAGCTATGTCCCCGCAGAAGCAGCTCATATCGGCATGATCAGCCA GTTGTTCAGCCGCGTTGGCGCATCAGACGATCTCGCGCGTGGACGCTCGACCTTTATGGTGGAAATGGTAGAGACCGCTG CCATTCTGAATCAGGCCGATGATCGCGCACTGGTGATCCTTGATGAAATCGGGCGTGGCACGGCAACCTACGATGGCCTA TCGATCGCCTGGGCGACGCTCGAACATCTGCATGAGGTCAACCGCTCCCGGGCGCTCTTTGCAACGCACTATCACGAATT GACGCAACTCGCGACAAAACTCACCGGTGTCGAGAATGCAACCGTCTCGGTCAAAGAGTGGGAAGGCGAAGTCATCTTCC TGCATGAGGTCAAAAAGGGCGCAGCGGATCGTTCCTATGGTGTGCAGGTGGCACAGCTTGCCGGTCTACCTGCCTCGGTC GTGGCACGGGCGCGCAGCGTCCTCGATATGCTGGAGAAAAGCAGCCGCGAAGGTGGCGGTGCCGGAAAGGTACAAATCGA TGACCTGCCGTTGTTTGCAGCCGCGCCAGCGCCGCAGCCCAAACCCGCCCAAGGCCCCTCGCCGGTAGAAAAGCTCCTCG AAGAGATCTTTCCCGATGACCTCACCCCACGTGAAGCACTCGAAACACTCTATCGGCTCAAGGACGTAAGCAAGGGTTAA Protein sequence : MSVTPMMAQYLEIKAQYPDALLFYRMGDFYEMFFEDAVNAAEALDIALTKRGKHEGEDIPMCGVPVHAAEGYLLTLIRKG FRVAVGEQLESPAEAKKRGSKSVVKRDVVRLVTPGTLTEDSLLEARRHNFLVAYSELRDQAALAWADISTGAFHVMPVAR VRLSPELARLAPSELIVADGPIFDATLPLAEEYKIPLTPLGKASFDSTAAEKRLCHLFNVSALDGFGTFNRAEISAMGAV VDYLEITQKGKLPLLQPPLQESEDRTVQIDASTRRNLELTRSLSGGRAGSLLSVVDRTVTPGGARLLEQRLSSPSRNLDV ISARLEALDTIVEDPIRCDTLRGLLRKTPDIDRALSRLALDRGGPRDLAAIRNALSQGEDIERALQDPDLPTLLRDAAHS LEGFQDLLSLLDAALIAEPPLLARDGGFIAAGYDRELDEARTLRDEGRSVIAGLQKKYAEHTGISSLKIKHNNVLGYFIE TTSTHAAKMQSAPMSDTYIHRQTTANQVRFTTVELSEIETKILNAGNLALEIEKRLYQRLSGAILDSAARLNQAARGFAE IDLVTALADLARAENWTRPRVDTSRAFHVDGGRHPVVEQALRHQGGDSFVANDCDLSPQDGAAIWLLTGPNMAGKSTFLR QNALIAVLAQMGSYVPAEAAHIGMISQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYDGL SIAWATLEHLHEVNRSRALFATHYHELTQLATKLTGVENATVSVKEWEGEVIFLHEVKKGAADRSYGVQVAQLAGLPASV VARARSVLDMLEKSSREGGGAGKVQIDDLPLFAAAPAPQPKPAQGPSPVEKLLEEIFPDDLTPREALETLYRLKDVSKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 1e-126 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TM1040_2875 | YP_614869.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 1e-139 | 43 |
