Gene Information

Name : TM1040_2320 (TM1040_2320)
Accession : YP_614314.1
Strain : Ruegeria sp. TM1040
Genome accession: NC_008044
Putative virulence/resistance : Resistance
Product : chloramphenicol O-acetyltransferase
Function : -
COG functional category : R : General function prediction only
COG ID : COG0110
EC number : -
Position : 2440401 - 2441042 bp
Length : 642 bp
Strand : +
Note : PFAM: transferase hexapeptide repeat: (0.031); KEGG: sil:SPO3057 streptogramin acetyltransferase, , ev=4e-87, 68% identity

DNA sequence : 
ATGCCGCTGCCAGACCCCAGACTGCGCCATCCGATTGTGCTGCCGGACGGGACTCCGCATGCCGGGACCGTGCTGTTGGC
GCGTGTGGTGGAGAACCCGAATTTCATTGTCGGGGACTACACCTATGCATCGGATTTCGAGCCACCACGCGACTGGGGCA
GCCACCTCGCACCCTATCTGTTTGCGGGCGCGCGCGAGCAGCTCAAGATCGGTCGGTTTTGTCAAATCGCGCATGGGGTG
AAGTTCATCACCGCCTCTGCCAACCACGCGCAAGAGGGCCTCAGCTGCTATCCGTTTCCGGTGTTTGATCCCGCGCAGAT
GGCCGGGTTTCAACCCGACACCCGCGACACGGTGATCGGCAATGATGTCTGGATCGGCTACGGCACGCTGATCCTGCCCG
GCGCGCGCATCGGCGACGGCGCCATCATCGGCGCGGGTGCCGTGGTGCGCGGCACCGTGCCGCCCTATGCGATCATGACC
GGCAATCCTGCCAGCATCGCCCGCCACCGTTTCTCCAAACCTCAGATCGCCCGGCTTCTGGCGCTGAAATGGTGGGACTG
GCCCGCTGATCTGATCCTGCGCGCCGAGCCTGCGATCACCTCGGGCGATCTTGACATGCTCGAAGCGCTCGCCCCCGACT
GA

Protein sequence : 
MPLPDPRLRHPIVLPDGTPHAGTVLLARVVENPNFIVGDYTYASDFEPPRDWGSHLAPYLFAGAREQLKIGRFCQIAHGV
KFITASANHAQEGLSCYPFPVFDPAQMAGFQPDTRDTVIGNDVWIGYGTLILPGARIGDGAIIGAGAVVRGTVPPYAIMT
GNPASIARHRFSKPQIARLLALKWWDWPADLILRAEPAITSGDLDMLEALAPD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catB8 YP_005797132.1 chloramphenicol acetyltransferase Not tested AbaR4e Protein 2e-17 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TM1040_2320 YP_614314.1 chloramphenicol O-acetyltransferase AM180355.1.gene2499. Protein 4e-29 43
TM1040_2320 YP_614314.1 chloramphenicol O-acetyltransferase AY123251.gene2.p01 Protein 9e-18 43
TM1040_2320 YP_614314.1 chloramphenicol O-acetyltransferase JF268688.1.gene6.p01 Protein 5e-20 42