Gene Information

Name : TM1040_2270 (TM1040_2270)
Accession : YP_614264.1
Strain : Ruegeria sp. TM1040
Genome accession: NC_008044
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 2384585 - 2385289 bp
Length : 705 bp
Strand : +
Note : PFAM: ABC transporter related: (4.5e-64); SMART: ATPase: (3.4e-16); KEGG: rsp:RSP_3602 ABC efflux transporter, ATPase subunit, ev=9e-90, 75% identity

DNA sequence : 
ATGAGCACCGATGCCCGCCCCATTCTTACGCTTCAAGATGTGCATTTGTCGTTGAATGGCAATACCGGCCCGGTGCGGAT
CCTCGAAGAGATCTCGCTCGAGGTCCAATCCGGCGAGACGCTGGCCCTTGTTGGCCCATCGGGGTCGGGGAAATCATCGC
TGCTGATGGTGATGGGCGGGCTGGAACAGGCCACCGGCGGCCAAGTGCGCGCCATGGGAGAGGATCTGACCCGGCTGGAC
GAGGACGCGCTGGCCCGGTTTCGCCGCGCCCACATGGGGGTGGTGTTTCAGAGCTTTCACCTGATCCCGACCATGACGGC
GCTGGAAAATGTAGCCACGCCTCTGGAGCTGGCCGGGGCGCGCGACGCCTTTGACCGCGCCCGCGATGAACTGGAAGCCG
TGGGTCTGGGGCATCGTTGCGATCACATGCCTGCACAGATGTCGGGCGGTGAGCAGCAGCGTGTGGCTTTGGCCCGCGCC
GTCGTGACGCGCCCCGAGATCCTTTTGGCGGATGAGCCCACGGGCAATCTCGATCAGGCAAACGGCGCACAGGTGATGGA
TTTGCTCTTTGATCTGCGCGACCGGCATGGCTCGACACTGGTGATGGTGACTCATGCGCCCGAACTGGCCGAGCGCTGCG
ATCGCACCATCCGCCTGCGCGACGGTCGCATCCTGACCGACGCCCAGCGCGAGGCCGCGGAATGA

Protein sequence : 
MSTDARPILTLQDVHLSLNGNTGPVRILEEISLEVQSGETLALVGPSGSGKSSLLMVMGGLEQATGGQVRAMGEDLTRLD
EDALARFRRAHMGVVFQSFHLIPTMTALENVATPLELAGARDAFDRARDELEAVGLGHRCDHMPAQMSGGEQQRVALARA
VVTRPEILLADEPTGNLDQANGAQVMDLLFDLRDRHGSTLVMVTHAPELAERCDRTIRLRDGRILTDAQREAAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-26 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-27 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TM1040_2270 YP_614264.1 ABC transporter NC_008702.1.4606598. Protein 2e-34 46
TM1040_2270 YP_614264.1 ABC transporter NC_012469.1.7686878. Protein 7e-41 43
TM1040_2270 YP_614264.1 ABC transporter CP001581.1.gene598.p Protein 1e-40 42