|
Name : TM1040_1883 (TM1040_1883) Accession : YP_613878.1 Strain : Ruegeria sp. TM1040 Genome accession: NC_008044 Putative virulence/resistance : Virulence Product : betaine aldehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : - Position : 1982575 - 1984032 bp Length : 1458 bp Strand : - Note : catalyzes the formation of betaine from betaine aldehyde DNA sequence : ATGACACATCCGGCCCAGCCCAAAGCCAGCCATTTCATCAATGGCGAATATGTCGAAGACACCTCCGGCACCCCGATCCC GGTGATCTATGCTGCCACTGGCGAGACCATCGCCACCGTTTACGCGGCCACACCTGCAATCGTCGAGCAGGCGCTGACCG CCGCTGAGGCTGCGCAGAAAGAATGGGCCAAGATGTCCGGCACCGAGCGCGGCCGGGTGCTGCGCCGCGCCGCCGACATC ATGCGTGAACGCAATCACGAACTGTCGGTGCTGGAAACCTATGACACCGGCAAGCCCCTGCAGGAAACCCTGGTCGCGGA TGCCACCTCTGGTGCGGATGCACTTGAATATTTCGGGGGCCTCGCGGGCAGCCTCACCGGCGAGCACATCCAGCTTGGCG AAGACTGGGTCTATACCGTGCGCGAGCCGCTTGGCCTCTGTGTGGGGATCGGCGCGTGGAACTACCCCACCCAGATCGCC TGCTGGAAGGGCGCACCGGCATTGGCCTGTGGCAACGCCATGGTGTTCAAACCTTCCGAGACCACGCCGCTCTGCGCGCT CAAGGTGGCCGAGATCCTGATGGAGGCCGGCGCGCCAGCCGGGCTTTACAACGTCATTCAGGGCATGGGCGAAGTGGGCG GCAAACTGGTCACGGACCCGCGCGTCGACAAGGTCTCGCTCACCGGCTCCGTTCCGACCGGCAAAAAGGTCTATGCGGCT GCGGCTGAGGGCATGAAACATGTAACCATGGAGCTGGGTGGCAAATCCCCGATGATCGTCTTTGAAGACGCCGACATCGA GAGCGCCATCTCCGGTGCCATCAACGGCAACTTCTATTCCTCGGGTCAGGTCTGCTCGAACGGCACCCGCGTCTTTGTTC ACAAGGACATCAAGGAGAAGTTCCTCGCCCGTCTGGCCGAGCGCACTGCGACAGCCAAACTGGGCGATCCGATGGATGAG AGCGTGAACTTTGGCCCGATGGTCAGCGAGCGCCAGATGGAGATCGTGCTCGGTTATATCGAGAAGGGCAAATCCGAGGG CGCGCGCCTGATTTGTGGTGGCAACCGCGCTGATATGGATGGCTTTTTTGTGGAGCCCACGGTCTTTGCCGATGTCAAAG ACGATATGGTGATCGCCCGCGAAGAGATCTTTGGCCCGGTCATGTGCGTTTTGGATTTCGAGAGCGAAGACGAGGTGATC GCCCGCGCCAATGATACCGAATTTGGTCTCTCGGCAGGGGTCTTCACCAAGGATTTCACCCGCGCGCACCGGGTGATCGG TCAGCTTGAGGCCGGCAGCTGCTTTATCAATTCCTACAATGACGCACCCGTCGAGGCGCCCTTTGGTGGCGTCAAAGCCT CTGGCGTGGGGCGTGAAAATTCCAAGGAAGCGATCAAGCACTTCAGCCAGGTGAAGTCGGTCTACGTGCGCATGGGCGAC TGCGAAGCAGCCTTCTAA Protein sequence : MTHPAQPKASHFINGEYVEDTSGTPIPVIYAATGETIATVYAATPAIVEQALTAAEAAQKEWAKMSGTERGRVLRRAADI MRERNHELSVLETYDTGKPLQETLVADATSGADALEYFGGLAGSLTGEHIQLGEDWVYTVREPLGLCVGIGAWNYPTQIA CWKGAPALACGNAMVFKPSETTPLCALKVAEILMEAGAPAGLYNVIQGMGEVGGKLVTDPRVDKVSLTGSVPTGKKVYAA AAEGMKHVTMELGGKSPMIVFEDADIESAISGAINGNFYSSGQVCSNGTRVFVHKDIKEKFLARLAERTATAKLGDPMDE SVNFGPMVSERQMEIVLGYIEKGKSEGARLICGGNRADMDGFFVEPTVFADVKDDMVIAREEIFGPVMCVLDFESEDEVI ARANDTEFGLSAGVFTKDFTRAHRVIGQLEAGSCFINSYNDAPVEAPFGGVKASGVGRENSKEAIKHFSQVKSVYVRMGD CEAAF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0819 | NP_230467.2 | aldehyde dehydrogenase | Not tested | VPI-1 | Protein | 2e-68 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TM1040_1883 | YP_613878.1 | betaine aldehyde dehydrogenase | VFG0082 | Protein | 9e-69 | 41 |
