Gene Information

Name : TM1040_1845 (TM1040_1845)
Accession : YP_613840.1
Strain : Ruegeria sp. TM1040
Genome accession: NC_008044
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1945917 - 1946600 bp
Length : 684 bp
Strand : -
Note : PFAM: ABC transporter related: (8.3e-58); SMART: ATPase: (5.4e-16); KEGG: sil:SPO1124 lipoprotein releasing system ATP-binding protein, ev=1e-93, 78% identity

DNA sequence : 
ATGAGTGAGGTGACGCTGAAAATCGAAGGCCTGAGGAAGACCTATCTGGCTGGCACCCCTGGTGAGGTTGCGGTTCTGCG
CGGCGTGGATCTGACCCTGCATGCGGGCGAGGTTGTGGCGCTGGTGGCGCCCTCGGGGGCGGGTAAATCGACGCTTCTGC
AGATTGCCGGGCTTCTGGATGTGGCCGACGCAGGCCGGGTGGAGATTGCCGGGCAGGACATGGCGGGCGCGCGCGATCGC
AAACGCACGCGGGTGCGGCGGCAGGATGTGGGTTTTGTCTATCAGTTCCACCATCTGCTGCCGGAGTTCTCGGCGCTGGA
GAATATCGTGCTGCCGCAACTCGCCAATGGCATCTCGCAGCGGGACGCCGAAGCGCGCGGCGCCGAGCTCCTGGCGCTTG
TGGGGCTCGAAACCCGCGCCGCGCATCGCCCCGCGGCGCTTTCCGGCGGCGAGCAGCAACGGGTGGCGTTCTGTCGCGCC
CTGGCCAATCGCCCGCGGCTGTTGCTCGCGGATGAGCCAACCGGAAACCTGGACCCGGCGACGTCGGATCAAGTGTTCGA
AGTGCTGATGCAATTGGTGTCCGAGACGGGTCTTTCGGCGCTGATCGCCACGCATAATCTTGAGCTGGCCGCAAGAATGG
ACCGGGTGTTGCATCTTGAGGACGGCGTTCTGGTCGAGCGCTGA

Protein sequence : 
MSEVTLKIEGLRKTYLAGTPGEVAVLRGVDLTLHAGEVVALVAPSGAGKSTLLQIAGLLDVADAGRVEIAGQDMAGARDR
KRTRVRRQDVGFVYQFHHLLPEFSALENIVLPQLANGISQRDAEARGAELLALVGLETRAAHRPAALSGGEQQRVAFCRA
LANRPRLLLADEPTGNLDPATSDQVFEVLMQLVSETGLSALIATHNLELAARMDRVLHLEDGVLVER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-19 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-20 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-20 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-20 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TM1040_1845 YP_613840.1 ABC transporter NC_008702.1.4606598. Protein 3e-26 44
TM1040_1845 YP_613840.1 ABC transporter NC_012469.1.7685735. Protein 1e-22 42
TM1040_1845 YP_613840.1 ABC transporter NC_012469.1.7686878. Protein 8e-26 41