Gene Information

Name : TM1040_1178 (TM1040_1178)
Accession : YP_613173.1
Strain : Ruegeria sp. TM1040
Genome accession: NC_008044
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1269225 - 1269887 bp
Length : 663 bp
Strand : -
Note : PFAM: ABC transporter related: (4.7e-58); SMART: ATPase: (4.5e-17); KEGG: sil:SPO2181 ABC transporter, ATP-binding protein, ev=2e-64, 61% identity

DNA sequence : 
ATGCTTTTGAGTGTGAACGGCCTGACCCATCGCCACCCCGGCGGGACCCGCGATGTGCTGCGGGATGTCTCGTTCGAGGT
GGCGCGCGGCGAAAGCGTGGCCCTGACCGGAGAGAGCGGCTCGGGCAAAAGCACGCTCTTGCACATGCTGGCAGCGCTGG
ACCGCCCCAGCCACGGAGAGATCCGCTTTCTGGAACACGAGATCACCCGGCTCAATGATCGCGCAGCCTCGGAGCTTCGG
CGCAGCCGCATTGCGTTGGTCTTTCAACAGTTCAACCTCGTGCCCGCGCTTACGGTTGCGGACAATATCGCGCTTCACGC
CAAGCTCGGCGGGCGATTTGATCCCGCCTGGAGTGCGGAAGTCACGTCTCGACTGGGCCTTGCGGATCTCACTGCGCGCT
ACCCCGAGCAAATCTCTGGCGGGCAGCAGCAACGGGTGGCGATTGCGCGCGCCCTGACCCTGCGCCCGGATCTTCTGTTG
GCGGATGAGCCCACCGGCAATCTAGATGAAACCGCAAGCGCGGAGGTGCTGCGCCTGATGCTGGAGCTGGTCGCGGACAC
CGGTTGTGCCTTGTTCCTTGTCACCCATTCCGCCGCCATCGCGGCGCGCTGCAGTCGGCACCTGCACCTGAGGGCCGGGC
AGGTGCGGGATCACGCCCCATGA

Protein sequence : 
MLLSVNGLTHRHPGGTRDVLRDVSFEVARGESVALTGESGSGKSTLLHMLAALDRPSHGEIRFLEHEITRLNDRAASELR
RSRIALVFQQFNLVPALTVADNIALHAKLGGRFDPAWSAEVTSRLGLADLTARYPEQISGGQQQRVAIARALTLRPDLLL
ADEPTGNLDETASAEVLRLMLELVADTGCALFLVTHSAAIAARCSRHLHLRAGQVRDHAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-33 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-33 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-33 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TM1040_1178 YP_613173.1 ABC transporter NC_008702.1.4606598. Protein 3e-32 47
TM1040_1178 YP_613173.1 ABC transporter CP001581.1.gene798.p Protein 7e-33 43
TM1040_1178 YP_613173.1 ABC transporter CP001581.1.gene598.p Protein 2e-29 41