Gene Information

Name : TM1040_3434 (TM1040_3434)
Accession : YP_611668.1
Strain :
Genome accession: NC_008043
Putative virulence/resistance : Unknown
Product : ABC transporter
Function : -
COG functional category : R : General function prediction only
COG ID : COG1123
EC number : -
Position : 458378 - 459988 bp
Length : 1611 bp
Strand : -
Note : PFAM: ABC transporter related: (4.5e-61) Oligopeptide/dipeptide ABC transporter-like: (9.6e-05); SMART: ATPase: (8.4e-19); KEGG: sil:SPO0098 peptide/opine/nickel uptake family ABC transporter, ATP-binding protein, ev=0.0, 69% identity

DNA sequence :
ATGAGCCTTCTGGATATTTCCAACCTCTCGCTCTCGATCGGGGCGCTGCCGATCCTGCGGAATGTGACCCTGTCGATAGC
GGCAGGCGAGATCCTCGCGGTGACGGGCGAGAGCGGATCTGGCAAATCGATGACGGCTTTTTCCGTCATGCGCCTGTTGC
CGCAGGCTGCCAAGATTGACGGCGCGATTTACCTTGAGGACGAAAACCTCTGCGCCCTCTCCGAAGACGAGATGTGCCAG
CGGCGCGGGCGTGACATCGGTATGGTGTTTCAAGAGCCCATGACGGCGCTCAACCCGGTGATGACCATCGGGGCGCAGGT
GATGGAGACGATCCTCTTGCACACCGACACCGCCGAAGCCGACGCCAAGGCCGAGGCCGCGCGCGTGTTGACCCGGGTCG
GCCTGCCGCCGGAGCGTTTCCCGATGGATCGCTACCCGCACGAGCTCTCTGGCGGACAACGTCAGCGCGTTGTGATCGCG
ATGGCGATTGCGCTCAGGCCCAAGCTCTTGATCGCGGATGAACCCACAACCGCGCTGGATGTGACTACACAGGCGCAGAT
CCTTGATCTCTTGCGGGACCTGGTGCGCGAATACGGGATGGGGCTGCTCATTATCACCCATGACCTTGCTGTTGTGGCCG
ATCTTGCCGATCGGATCGTGGTGATGCGCAAGGGTGAGGTGGTCGAGCGCGGCCCGACCCTGAGCGTGCTCACCCATCAA
CGCCACCCCTATACGCGCATGCTGTTTGAGGCGTCCGCTCACAAGGTTGCGCTGCCTGCCGCGCCCGAGGCCCCTGCCCC
GCTGCTGGAGGTGCGAGGCGCCGTGCGCGACTATGCAACGCCTCGCAAAGGCTGGCTGGGCAAACCAGGCACGTTTCGCG
CCGTCAACGATGTGAGCTTCACGCTTCACAAGGGCGAGCGTCTGGGCCTTGTGGGCGAGTCCGGATGCGGCAAATCCACC
CTGACCCGGGCCATTCTGGGCCTCGAAGGGCTGCAAGGCGGAGAGCTGCTGCTGAACGGTCAGCCCCTGTCGCAACAGCG
CAGCGCCGCCCAGCGGCAAGCGATGCAGGTGGTGTTTCAGGACCCTTATGGCAGTTTCAATCCGCGCCACCGGGTTGAGC
GGCTGGTGACGGAACCGTTTCATCTATCGCCGGACGCCGCAACCGGCCAAGAGCGGCGCGACCTGGTGGGACAGGTGCTG
GAGGACGTGGGGCTCAAGGCTTCGGATGCAAACAAGTATCCGCATCAGTTTTCCGGTGGGCAACGTCAGCGCATCGCCAT
TGCGCGCGCGCTGATTACGCGGCCCGAGCTCATCATCTTTGACGAGGCGGTCTCGGCGCTCGATGTCTCGGTGCGCGCCC
GTATTCTCGACCTGATTGCCGAGCTCTGCGAGGCCTATGGGCTCACCTATCTCTTTATCAGCCACGATCTGAGCGTGGTG
CGCGAGGTCTGCGACCGGGTGCTGGTGATGCAGAAGGGCGAAATCGTCGAAGAAGGCCCCGTCGACGACGTCTTTACCGC
GCCACAGCACAGCTACACGCAGAAACTTCTGGCGGCGGCGCCGGTGCTGCCGGACATCACGCCAACCGAGCCCGTTGAGG
CCCCCGCATGA

Protein sequence :
MSLLDISNLSLSIGALPILRNVTLSIAAGEILAVTGESGSGKSMTAFSVMRLLPQAAKIDGAIYLEDENLCALSEDEMCQ
RRGRDIGMVFQEPMTALNPVMTIGAQVMETILLHTDTAEADAKAEAARVLTRVGLPPERFPMDRYPHELSGGQRQRVVIA
MAIALRPKLLIADEPTTALDVTTQAQILDLLRDLVREYGMGLLIITHDLAVVADLADRIVVMRKGEVVERGPTLSVLTHQ
RHPYTRMLFEASAHKVALPAAPEAPAPLLEVRGAVRDYATPRKGWLGKPGTFRAVNDVSFTLHKGERLGLVGESGCGKST
LTRAILGLEGLQGGELLLNGQPLSQQRSAAQRQAMQVVFQDPYGSFNPRHRVERLVTEPFHLSPDAATGQERRDLVGQVL
EDVGLKASDANKYPHQFSGGQRQRIAIARALITRPELIIFDEAVSALDVSVRARILDLIAELCEAYGLTYLFISHDLSVV
REVCDRVLVMQKGEIVEEGPVDDVFTAPQHSYTQKLLAAAPVLPDITPTEPVEAPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 6e-86 46
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 6e-86 46
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 6e-86 46
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 6e-86 46
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 2e-86 42