Gene Information

Name : PSEEN3944 (PSEEN3944)
Accession : YP_609435.1
Strain : Pseudomonas entomophila L48
Genome accession: NC_008027
Putative virulence/resistance : Unknown
Product : IS3 family transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 4235947 - 4236780 bp
Length : 834 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme

DNA sequence : 
GTGCGTCGCCTTTGCCAAACCCTCAAGGTGCATCCCAGCGGCTACTACGCTTGGTTGGCCGAGCCTCAATCTGTCCGAGC
CAAAGAAGATCAGCGCCTGCTTGGCTTGATCAAGCAGGCCTGGTTAGAAAGCGGCGGCGTGTATGGCTATCGCAAGATTC
ACGATGACCTGCGAGAGCTAGGAGAGATCTGTGGGCGAAATCGAGTCGGTCGCTTGATGCAGGCAGAGGGGCTGCGTTCG
CAAACGGGCCATCGCCGTCGTACTGGGTTTTATAGCGGAAAACCAACAGCGGCATCGCCCAACCATCTGGCCCGGCAGTT
CAAGGTCAGTGAGCCGAATAAGGTCTGGGTGACCGATATCACCTACATCCGCACCTATGAAGGGTGGCTGTACCTGGCGG
TAGTGCTGGATCTGTTCTCTCGCCAAGTCATTGGTTGGTCAATGAAGCCCAGGATGAGCAGCGACCTAGCCATCGACGCC
ATGCTGATGGCCTTGTGGCGACGCAAGCCACAGCAGCAAGTGATGATTCACTCAGACCAAGGCAGTCAGTTCAGTAGCTC
AGATTGGCAAAGCTTCCTGAAGGCCAACAATGTGATCAGTAGCATGAGCCGACGGGGAAACTGCCACGACAATGCCGTAG
CCGAGAGCTTTTTCCAGCTTTTGAAGCGGGAGCGAATCCGACGAAAGATCTACGCAACGCGTGACGAAGCCCGAAGTGAT
ATTTTCGATTACATCGAGATGTTCTATAACCCTAAACGCCGACACGGCAGCGCTATGCAGCTGTCGCCAGTAGAGTATGA
GAAACGCCATTTTCTGAGCTTGGAGAGTGTCTAG

Protein sequence : 
MRRLCQTLKVHPSGYYAWLAEPQSVRAKEDQRLLGLIKQAWLESGGVYGYRKIHDDLRELGEICGRNRVGRLMQAEGLRS
QTGHRRRTGFYSGKPTAASPNHLARQFKVSEPNKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMSSDLAIDA
MLMALWRRKPQQQVMIHSDQGSQFSSSDWQSFLKANNVISSMSRRGNCHDNAVAESFFQLLKRERIRRKIYATRDEARSD
IFDYIEMFYNPKRRHGSAMQLSPVEYEKRHFLSLESV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 5e-32 46
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 5e-32 46
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-40 44
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 2e-40 44
unnamed CAI43898.1 putative transposase Not tested LEE Protein 3e-31 43
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 3e-31 43
unnamed AAC31485.1 L0006 Not tested LEE Protein 2e-30 42
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 2e-30 42
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 2e-33 42
Z5089 NP_290241.1 transposase Not tested LEE Protein 3e-30 42
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 2e-30 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 6e-45 41
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-45 41
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-41 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-41 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-41 41
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-36 41
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-36 41
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-36 41
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-36 41
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 4e-36 41
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 3e-36 41
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 4e-36 41
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEEN3944 YP_609435.1 IS3 family transposase VFG1484 Protein 3e-32 46
PSEEN3944 YP_609435.1 IS3 family transposase VFG0785 Protein 1e-30 42
PSEEN3944 YP_609435.1 IS3 family transposase VFG1122 Protein 2e-36 41