|
Name : XcpR-2 (PSEEN2333) Accession : YP_607946.1 Strain : Pseudomonas entomophila L48 Genome accession: NC_008027 Putative virulence/resistance : Virulence Product : type II secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : 3.6.1.3 Position : 2417033 - 2418454 bp Length : 1422 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11266368; Product type e : enzyme DNA sequence : GTGAGCCGCCTGCCGTACGCCTGGGCCAAGGCCCAGCGCCTGGTGCTGCAGGCCAGCGGCGAGGAGGGCGCGCGCCTGGC GCGCTGCCCGTCGAGCCCGGCGTGGGCAGTAGCGGAGGTGCTCCGGCGATTTGGCCAGGTGCCGGTCGAGGCGTTCAGCG ACGCACAGATGGACGAACTGCTGATCAGCGCCTACGCCGATACCGGCAGCGCCGCGGCGGTGGTGGGGGCGGCGGAGAAC GAGGTCGACCTCGACCGCCTGCTGCAGGACATGCCCGAGGTCACCGACCTGCTCGAAGCCCAGGACGACGCGCCGGTGAT CCGCATGATCAACGCCTTGCTCACCCAGGCCGCGCGCGACCAGGCCAGCGATATCCATATCGAGCCGTTCGAGAGCCACT GCCTGGTGCGCTACCGGGTCGACGGCACCCTGCGCGACGTGGTCTCGCCGCGCAAGGCACTGCACGGGGCGCTGGTGTCA CGGATCAAGATCATGGCGCAGCTGGACATCGCCGAGAAACGCCTGCCCCAGGACGGCCGCATCGCCCTGCGGGTGGCCGG GCGGCCGATCGATATCCGTGTGTCCACCGTGCCTACCGGGCATGGCGAACGGGTGGTGATGCGCCTGCTCGACAAGCAGG CCGGACGGCTGCGCCTGGAGGCGCTGGGCATGGACGCGGCGCTGCTGGCGCGGCTCGACCAGCTAATTCGCCAGCCCCAT GGCATCGTCCTGGTCACCGGCCCCACCGGCTCGGGCAAGACCACCAGCCTGTACGCCGCCCTGGCGCGGCTGGATGCCAG CGTCAGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGACCTGCCGGGGATCAGCCAGATCCAGGTCAACGCGCGCA TCGACATGAGCTTCGCCGTGGCCCTGCGGGCGATCCTGCGCCAGGACCCTGATGTGATCATGATCGGCGAGATCCGCGAC CTGGAGACTGCGCAAATCGCCGTGCAGGCGTCGTTGACCGGGCACCTGGTGCTGGCCACCTTGCATACCAACGACGCGGT GTCGGCAGTCAACCGCCTGGTCGACATGGGGGTGGAGCCGTTCCTGCTGGCCTCGGCGCTGCTCGGGGTGCTGGCCCAGC GCCTGGTGCGCCGGTTGTGCCCGCATTGCCGTGAGCCCGACCCGGCGACGCCGGGGCAATACCGCGCGGTCGGCTGTGCC CAGTGCAACCACTGCGGCTACAGCGGGCGTACCGGCATCCACGAACTGTTCTGCGTCGACGACGCGGTGCGCAGCCTGGT GCACCAGGGCGCCGATGAACAGGCCCTGCGCGCCGCCGCCCGGCGCAATGGCATGCTCAGCCTGCGCGAGGATGGCCAGC GCTGGGTCGACGATGGCAGCACCTGCCTTGAAGAAATCCTGCGTGTCACACGGGACGCCTGA Protein sequence : MSRLPYAWAKAQRLVLQASGEEGARLARCPSSPAWAVAEVLRRFGQVPVEAFSDAQMDELLISAYADTGSAAAVVGAAEN EVDLDRLLQDMPEVTDLLEAQDDAPVIRMINALLTQAARDQASDIHIEPFESHCLVRYRVDGTLRDVVSPRKALHGALVS RIKIMAQLDIAEKRLPQDGRIALRVAGRPIDIRVSTVPTGHGERVVMRLLDKQAGRLRLEALGMDAALLARLDQLIRQPH GIVLVTGPTGSGKTTSLYAALARLDASVSNILTVEDPVEYDLPGISQIQVNARIDMSFAVALRAILRQDPDVIMIGEIRD LETAQIAVQASLTGHLVLATLHTNDAVSAVNRLVDMGVEPFLLASALLGVLAQRLVRRLCPHCREPDPATPGQYRAVGCA QCNHCGYSGRTGIHELFCVDDAVRSLVHQGADEQALRAAARRNGMLSLREDGQRWVDDGSTCLEEILRVTRDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-110 | 58 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-110 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| XcpR-2 | YP_607946.1 | type II secretion pathway protein E | VFG2048 | Protein | 2e-109 | 58 |
| XcpR-2 | YP_607946.1 | type II secretion pathway protein E | VFG0182 | Protein | 4e-120 | 56 |
| XcpR-2 | YP_607946.1 | type II secretion pathway protein E | VFG1876 | Protein | 6e-116 | 51 |
| XcpR-2 | YP_607946.1 | type II secretion pathway protein E | VFG2426 | Protein | 6e-76 | 50 |
