Gene Information

Name : Dgeo_0533 (Dgeo_0533)
Accession : YP_604004.1
Strain : Deinococcus geothermalis DSM 11300
Genome accession: NC_008025
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 559402 - 560169 bp
Length : 768 bp
Strand : -
Note : PFAM: ABC transporter related: (2.4e-52); SMART: ATPase: (2.4e-16); KEGG: dra:DR2284 manganese transport system ATP-binding protein, ev=9e-96, 72% identity

DNA sequence : 
ATGACGCACTCGCAATATCACCTCACTGCGCGGTATGCTCGGCGGATGCTGGGCGTGGAGAACCTCACGGTGCGGTACGG
CACGCACACAGCGCTGGAAGACGCGACGGTGCACTTTGCACCAGGGACTTTCAGCGCCGTGATTGGGCCGAACGGAGCCG
GCAAGAGCACGCTGCTCAAGACGCTGGTGGGCCTCACGCCACCGACGGACGGCGAGGTGCTCTATACCGGTGGCCGGAGC
GTCCGGGACGATGTGGCCTACGTGCCGCAGCAGCAGACCCTCGACTGGGCCTTTCCCGTCACGGTCTGGGACGTCGCCAT
GATGGGCCGGACCGGGCGCATCGGCTGGCTGCGCTGGCCGGGACGCGCGGACCGCGAACGGGTGGCGCAGGCGCTGCGGC
AGACCGGCGTCTACGACCTGCGCGGGCGGCATATCGGCGCGCTGAGCGGAGGGCAGCGGCAACGGGTGCTGCTGGCGCGG
ATGCTGGCGCGGGATGCGCGCGTGCTGCTGCTGGACGAACCCCTCACCGGGGTGGACGCGGCCACCCAGGAACAGCTCAT
GGCCTTGCTGCGCGCTCAGGCCGACGCGGGCCGAGCGGTGGTGATGGTCACGCACGACCTCGAACAGGCCCGGCGCTGGT
GTGACCACCTCGTGCTGGTCAATCGGCGGATTGTCGCGGACGGAACGCCCGACGAGGTGTATATGCCGCGCAACATCGAG
GCGACCTTTAGCGCCAGTCACCTCGGACCTACCCACGCGGAAGCGTGA

Protein sequence : 
MTHSQYHLTARYARRMLGVENLTVRYGTHTALEDATVHFAPGTFSAVIGPNGAGKSTLLKTLVGLTPPTDGEVLYTGGRS
VRDDVAYVPQQQTLDWAFPVTVWDVAMMGRTGRIGWLRWPGRADRERVAQALRQTGVYDLRGRHIGALSGGQRQRVLLAR
MLARDARVLLLDEPLTGVDAATQEQLMALLRAQADAGRAVVMVTHDLEQARRWCDHLVLVNRRIVADGTPDEVYMPRNIE
ATFSASHLGPTHAEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 2e-26 42
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 2e-26 42
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 3e-26 42
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-45 42
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 3e-26 41
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-43 41
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-43 41
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 8e-45 41
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-45 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dgeo_0533 YP_604004.1 ABC transporter BAC0440 Protein 3e-48 42
Dgeo_0533 YP_604004.1 ABC transporter BAC0350 Protein 4e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dgeo_0533 YP_604004.1 ABC transporter VFG0526 Protein 3e-45 41