|
Name : Dgeo_2012 (Dgeo_2012) Accession : YP_605475.1 Strain : Deinococcus geothermalis DSM 11300 Genome accession: NC_008025 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 2119917 - 2123057 bp Length : 3141 bp Strand : - Note : KEGG: bte:BTH_I2740 type I restriction-modification system endonuclease, ev=0.0, 84% identity; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family: (2.2e-229); PFAM: type III restriction enzyme, res subunit: (1.2e-10) protein of unknown function DNA sequence : ATGGCATTTCTGTCGGAAGCCGAGGTCGAAAACGCCCTTCTGGATCAGCTGCGCGCGCTCGGCTACAGCATCGAACGCGA GGAGGACATCGGCCCCGACGGCCACCGGCCGGAGCGCGAGAGCCACGACGAGGTGGTGCTGCGCAAGCGGTTCGAGGACG CCGTTGCCCGCCTGAACCCCGGGGTGCCACTGGAGGCGCGTCATGATGCCGTGCGGCGCGTGACGCAGTCCGAGCTGCCA TCGTTGCTTGCAGAAAACCGCCGCCTGCACAAACTGCTGACCGAAGGCGTGGATGTGGAGTACTACGCGGACGATGGCGT GCTCACCGCCGGCAAGGCGCGGCTGATCGACTTCGATGACCCGGCCAACAACGACTGGCTGGCGGTGAACCAGTTCGTCG TCATCAACGGGCAGTACCAGCGGCGACCCGATGTCGTGGTGTTCGTGAACGGCTTGCCGCTTGCGGTGATCGAGCTCAAG GCGCCGGGCAACGACCAAGCCACGCTCACGGGCGCGTTCAACCAGTTGCAGACCTACAAGGGGGAGATCACCCAGCTTTT TCGCACCAACGCACTGCTGGTCACGTCGGACGGCATTTCCGCTCGGGTGGGGTCGCTGTCGGCCGACTTCGAGCGCTTCA TGCCGTGGCGCACCACCGACGGTCGGGAGGTGGCGCCCAAGGGAGCGCCGGAGCTGGAGACGCTGATCGAAGGCGTGTTC GAACATCGCCGCTTGCTCGATCTGTTGCGTCACTTCACGGTCTTCGGCGAAACAGGCGCTGGGCTCATCAAGATCATCGC GGGCTACCATCAGTTCCACGCGGTACGACATGCGGTCGAGCGCACGGTGGCCGCATCCTCTGCCGGGGGAGACAGAAAGG CCGGGGTGATCTGGCATACCCAGGGCTCGGGCAAGAGCCTGTTGATGGCGTTCTACGCAGGTCTTCTCGTTAGACACCCG GCGCTGGAAAACCCGACCCTGGTCGTGCTGACCGATCGCAACGACCTGGACGATCAGCTCTTCGCCACCTTTTCGATGTG CCGCGACCTGATCCGGCAGACGCCGGTGCAAGCAGAGGGACGCGAGCACTTGAAAACGCTGCTGGACCGGGCCTCGGGCG GGGTGATCTTCACGACGCTGCAAAAGTTTGGCGAGATCGACGGGCCACTGACCACCCGGCGCAACGTGGTGGTCATCGCC GACGAGGCGCACCGCAGCCAGTACGGCTTCAAGGCCAAGGTGGATGCCAAGACGGGCGAGATCTCCTACGGCTTCGCCAA GTACCTGCGAGACGCGCTGCCGAACGCCTCGTTCATCGGCTTCACCGGTACGCCCATCGAGGCAGGCGACGTGAACACCC CGGCGGTGTTCGGCCACTACATCGACATTTACGACATCAGCCGCGCGGTGGAAGACGGCGCGACGGTGCCCATCTACTAC GAATCGCGGTTGGCGCGCATTGAACTCGACGAGGACGAAAAGCCGAAGATCGACGCCGAGATCGAGGAGATTCTGGAAGA CGAGGAAGAACCCGCCCGCGAGCGCGCCAAGCAGAAGTGGGCGACGGTGGAGGCGCTCGTTGGCGCGGACAAGCGCCTGC GACTGATCGCCCAGGATATCGTGCAGCACTTCGAGGCTCGCGTAGCCGCGCTGGACGGCAAGGCGATGATCGTCTGCATG AGCCGGCGCATCTGCGTCAAGCTCTACAACGAGATCGTGAAGCTGCGTCCCGGATGGCACAGCGATGACGACAACGCCGG GGCCGTCAAGATCGTGATGACCGGGGCGGCCTCCGATCCGCCCGAGTGGCAGAAGCATATCGGCAACAAGGCACGGCGCG ATCTGTTGGCCCGCCGCGCCCGCGACCCCAAAGACCCCTTGAAGCTCGTCATCGTGCGCGACATGTGGCTGACGGGCTTC GATGCGCCGTGCATGCACACCATGTATGTGGACAAGCCGATGCGCGGCCACGGGCTGATGCAGGCGATTGCGCGGGTGAA CCGGGTGTTTCGCGACAAGCCCGCCGGGCTGATCGTGGACTACATCGGCATTGCGCAGAACCTCAAAAACGCGCTTGCGC AGTACTCGCCGCGCGACCGCGAAAACACCGGCATCGACGAAGCCGAAGCCATCGCGGTAATGCTGGAAAAATACGAGGTC GTGCGCGACATGTTCCACGGCTTTGACTACCGCTCGGGTCTCAACGGTTCGCCCCAGGAGCGGCTGGCAATGATGGCGGG GGCCATCGAGTGGATCCTGGAGAGGCAGCAGCAGTGGGCGGCGCAGGAAACCACCCCGGAAGGCAAGAAGGCCGCGCACC GGCGCTTTGGCGATGCGGTGCTGGCCTTGTCCAAGGCGTATGCCTTGGCTTCCGCCTCGGACCCGGCGCGTGCTATCCGC GAAGAGGTGGGGTTTTTCCAGGCGATCCGTGCCGCGCTGATCAAGAGCAGCACGGGCTCCGACGCAAACCCGCAAGCGCG CGAGTGGGCCATCCAGCAGATCGTCAGTCGCGCGGTGGTCTCGACCGAGATTGTCGATATCCTAACTGCCGCGGGCATCA AGAGTCCGGACATCTCCATTCTGTCCGACGACTTCCTGGCCGAAGTGCAGCAGATGGAGAAAAAGAACCTGGCGCTGGAA GCCCTGCGCAAGCTCATCAACGACGGCATCCGCTCACGCGCCAAGGCCAACGTCGTGCAGACCCGTGCGTTTTCGCAGCG GCTGGAGGATGCCGTTGCACGCTACCACGCCAACGCCATCACCACCGCCGAGGTGCTGCAGGAGCTGATCCACTTGGCCA AAGACATCCGCGCGGCGCGCCAGCGTGGCGAAGAGTCTGGATTGTCCGACGAGGAGATTGCCTTCTACGACGCCCTGGCC GAGAACGAAAGCGCGGTTCAGGTCATGGGGGATGAGAAGCTGCGCGTGATTGCCCACGAGCTGCTGGTGAACCTGCGCGA AAACGTCTCCGTGGACTGGGCCCACCGTGAATCGGCCCGCGCTCGCCTGCGCGTGCTGGTCAAGCGCATCCTGCGCAAGT ACGGTTACCCGCCTGATTTGCAGGACGCGGCGGTGCAGACGGTGCTGCAGCAGGCCGAGGCACTGTCGGCGGTGTGGAGT CTGGCTCGTAACTCTGGGTAG Protein sequence : MAFLSEAEVENALLDQLRALGYSIEREEDIGPDGHRPERESHDEVVLRKRFEDAVARLNPGVPLEARHDAVRRVTQSELP SLLAENRRLHKLLTEGVDVEYYADDGVLTAGKARLIDFDDPANNDWLAVNQFVVINGQYQRRPDVVVFVNGLPLAVIELK APGNDQATLTGAFNQLQTYKGEITQLFRTNALLVTSDGISARVGSLSADFERFMPWRTTDGREVAPKGAPELETLIEGVF EHRRLLDLLRHFTVFGETGAGLIKIIAGYHQFHAVRHAVERTVAASSAGGDRKAGVIWHTQGSGKSLLMAFYAGLLVRHP ALENPTLVVLTDRNDLDDQLFATFSMCRDLIRQTPVQAEGREHLKTLLDRASGGVIFTTLQKFGEIDGPLTTRRNVVVIA DEAHRSQYGFKAKVDAKTGEISYGFAKYLRDALPNASFIGFTGTPIEAGDVNTPAVFGHYIDIYDISRAVEDGATVPIYY ESRLARIELDEDEKPKIDAEIEEILEDEEEPARERAKQKWATVEALVGADKRLRLIAQDIVQHFEARVAALDGKAMIVCM SRRICVKLYNEIVKLRPGWHSDDDNAGAVKIVMTGAASDPPEWQKHIGNKARRDLLARRARDPKDPLKLVIVRDMWLTGF DAPCMHTMYVDKPMRGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKNALAQYSPRDRENTGIDEAEAIAVMLEKYEV VRDMFHGFDYRSGLNGSPQERLAMMAGAIEWILERQQQWAAQETTPEGKKAAHRRFGDAVLALSKAYALASASDPARAIR EEVGFFQAIRAALIKSSTGSDANPQAREWAIQQIVSRAVVSTEIVDILTAAGIKSPDISILSDDFLAEVQQMEKKNLALE ALRKLINDGIRSRAKANVVQTRAFSQRLEDAVARYHANAITTAEVLQELIHLAKDIRAARQRGEESGLSDEEIAFYDALA ENESAVQVMGDEKLRVIAHELLVNLRENVSVDWAHRESARARLRVLVKRILRKYGYPPDLQDAAVQTVLQQAEALSAVWS LARNSG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 49 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 48 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 48 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 48 |
