Gene Information

Name : Dgeo_0172 (Dgeo_0172)
Accession : YP_603644.1
Strain : Deinococcus geothermalis DSM 11300
Genome accession: NC_008025
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG1125
EC number : -
Position : 160687 - 161619 bp
Length : 933 bp
Strand : -
Note : PFAM: ABC transporter related: (5.6e-68); SMART: ATPase: (3.9e-21); KEGG: sth:STH2630 glycine betaine/carnitine/choline ABC transporter ATP-binding protein, ev=5e-81, 52% identity

DNA sequence : 
ATGATCGAACTGCAACACCTCGAAAAGCGTTACGGCGACGCCTTTGCCGTGCGCGACCTTAATCTCGTCTTTCCGGCGGG
CGAACTCACCGCACTCCTCGGCCCGTCGGGGTGTGGCAAGACCACAACGCTGCGGATGATCAACCGCCTGATCGAACCGA
CCGGGGGACGCGTCCTGCTGGGAGGCCGCGACACCCGCGACTTCCGCCCGGAGGAGCTGCGGCGCGGCATCGGCTACGTG
ATCCAGCAGATCGGGCTGTTTCCCCACCTCACCGTCGCGCAGAATGTGGCAACCGTTCCCGAGCTGCTGGGCTGGGACCG
CCGCCGCACGGCCCGGCGGGTGGACGAACTGCTGGAGCTGGTGGGGCTCGACCCCGCCCTGTACCGCACCAAGAAACCCG
CCGAGCTGTCGGGTGGCCAGGCGCAGCGGGTGGGTGTGGCGCGGGCGCTGGCCGCCGACCCACCGGTCCTGCTGATGGAT
GAACCCTTCGGTGCCCTGGACCCCCTGGCCCGCGACCACCTCCAGGAGGCTTTCCGGGAAATCCAGCGGCGCCTCAACAA
GACCGTGGTGCTTGTCACCCACGACATCGACGAGGCGCTGCGCCTCGGCGACCGGGTCGCGCTGATGCGGGCGGGCAGTC
TCGCACAGTTCGGCTCCCCCGACGACCTGATCTACCGCCCTGCCGGTCTCTTCGTGAGCCAATTTCTGGGCGAGGACGCC
GCTCTACGGCAACTCGCGGGCCGGAGCGCCGCCGAGTTCGTCCGGCCCGGTGATCCTTCCGGCCTGCCGGTGATCGAGGG
AACATTGGATGCCCGCAGCGCCCTAGGGGTGATGTTGCGGGAAGGGACAGATGCCCTGGCCGTCAAGCGCGACGGCTTGT
TCCTTGGCGTGCTGCGCTGGGAGGAACTGCGCACGCAGGAGGCGCGGGCGTGA

Protein sequence : 
MIELQHLEKRYGDAFAVRDLNLVFPAGELTALLGPSGCGKTTTLRMINRLIEPTGGRVLLGGRDTRDFRPEELRRGIGYV
IQQIGLFPHLTVAQNVATVPELLGWDRRRTARRVDELLELVGLDPALYRTKKPAELSGGQAQRVGVARALAADPPVLLMD
EPFGALDPLARDHLQEAFREIQRRLNKTVVLVTHDIDEALRLGDRVALMRAGSLAQFGSPDDLIYRPAGLFVSQFLGEDA
ALRQLAGRSAAEFVRPGDPSGLPVIEGTLDARSALGVMLREGTDALAVKRDGLFLGVLRWEELRTQEARA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 5e-53 53
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 8e-53 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dgeo_0172 YP_603644.1 ABC transporter BAC0604 Protein 4e-33 43