|
Name : smpB (MGAS10750_Spy0428) Accession : YP_601922.1 Strain : Streptococcus pyogenes MGAS10750 Genome accession: NC_008024 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 418507 - 418974 bp Length : 468 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCAAAAGGTGAAGGTCATATACTGGCGCAAAATAAAAAGGCTAGACATGATTATCACATTGTTGAAACCGTTGAAGC AGGGATTGTCTTAACGGGAACTGAGATTAAAAGTGTTCGTGCAGCTCGTATTCAACTGAAAGATGGCTTTGCCCAAATTA AGAATGGGGAAGCGTGGTTGGTCAACGTGCATATTGCACCTTTTGAACAAGGTAATATTTGGAACGCTGATCCTGAACGA ACCCGCAAACTGCTGCTCAAAAAACGTGAGATTACGCATCTAGCAAATGAACTCAAAGGAACTGGCATGACTTTGGTTCC TCTCAAAGTTTACCTCAAGGATGGCTTTGCTAAAGTTCTGATTGGTCTAGCTAAAGGGAAACACGATTATGACAAACGCG AAACCATTAAACGCCGTGATCAGGAAAGAGATATTAAAAAACAAATGAAACACTACAATGCAAGGTAA Protein sequence : MAKGEGHILAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAPFEQGNIWNADPER TRKLLLKKREITHLANELKGTGMTLVPLKVYLKDGFAKVLIGLAKGKHDYDKRETIKRRDQERDIKKQMKHYNAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 4e-38 | 58 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 6e-35 | 48 |
