Gene Information

Name : yscS (LI0549)
Accession : YP_594924.1
Strain : Lawsonia intracellularis PHE/MN1-00
Genome accession: NC_008011
Putative virulence/resistance : Virulence
Product : translocation protein in type III secretion
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 668846 - 669106 bp
Length : 261 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAACGACAACTATGACATATACAGCAAAAGCACTTTATTTAGTGCTTGTGCTATCTATGCCACCTATTCTTGTTGC
ATCACTTGTTGGACTTTTTGTTAGTTTAATTCAAGCAATTACACAACTTCAAGAACAAACACTTGCATTTGGTATAAAAC
TTCTTGCTGTTGTACTTACTCTTTTTTTTATGGGTGGATGGTTAACAGGAGAACTCTATAGATATGCTGAAGAAATTTTC
AATCGTTTTCATATCATGTAA

Protein sequence : 
METTTMTYTAKALYLVLVLSMPPILVASLVGLFVSLIQAITQLQEQTLAFGIKLLAVVLTLFFMGGWLTGELYRYAEEIF
NRFHIM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 4e-14 55
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 4e-14 55
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 4e-14 55
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 4e-14 55
lscS AAO18039.1 LscS Virulence TTSS locus Protein 5e-17 54
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 3e-15 54
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 2e-15 54
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 5e-15 54
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 5e-10 54
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 5e-10 54
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 5e-10 54
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 3e-09 50
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 1e-11 49
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 1e-07 48
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 2e-07 48
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 2e-07 48
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 2e-07 48
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 2e-07 48
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 4e-10 48
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 2e-11 48
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 2e-08 48
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 2e-08 48
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 2e-11 48
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 4e-11 47
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 3e-11 47
escS AFO66341.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-07 44
escS AFO66401.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-07 44
escS CAC81848.1 EscS protein Virulence LEE II Protein 2e-08 41
escS YP_003223489.1 T3SS structure protein EscS Virulence LEE Protein 2e-08 41
escS YP_003232139.1 T3SS structure protein EscS Virulence LEE Protein 2e-08 41
unnamed AAL06355.1 EscS Virulence LEE Protein 2e-08 41
escS AAK26701.1 EscS Virulence LEE Protein 2e-08 41
escS AAL57528.1 EscS Virulence LEE Protein 2e-08 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscS YP_594924.1 translocation protein in type III secretion VFG0187 Protein 1e-13 60
yscS YP_594924.1 translocation protein in type III secretion VFG0395 Protein 3e-18 55
yscS YP_594924.1 translocation protein in type III secretion VFG0550 Protein 1e-14 55
yscS YP_594924.1 translocation protein in type III secretion VFG1772 Protein 5e-15 53
yscS YP_594924.1 translocation protein in type III secretion VFG2132 Protein 1e-12 50
yscS YP_594924.1 translocation protein in type III secretion VFG0043 Protein 8e-15 48
yscS YP_594924.1 translocation protein in type III secretion VFG0520 Protein 6e-08 48
yscS YP_594924.1 translocation protein in type III secretion VFG1013 Protein 1e-12 47
yscS YP_594924.1 translocation protein in type III secretion VFG2454 Protein 6e-09 46
yscS YP_594924.1 translocation protein in type III secretion VFG2495 Protein 0.002 46