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Name : yscV (LI0548) Accession : YP_594923.1 Strain : Lawsonia intracellularis PHE/MN1-00 Genome accession: NC_008011 Putative virulence/resistance : Virulence Product : type III secretion pore protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 666726 - 668828 bp Length : 2103 bp Strand : + Note : - DNA sequence : ATGAGCTTATTCGCTAAAGCTCAATCGACTGTAGGTGTTATTACACGAAATAATGACATCACTATGGTCCTTTTATTAGT GACTGTCATAGCATTAATGATTATCCCATTACCTACTCCTTTAGTGGATACACTGATTGGTATTAACATGGGACTTTCAT TTCTTATTGTAATGATGTGTATGTATGTTAAGACAGTTTTAGATTTTTCTGTTTTTCCCACTATGCTCCTTTTTACAACC CTGTTCAGAGTTGGTTTAAATATCACAACGACAAGACTTATTTTACTCCAAGCAGATGCTGGAGAAATCATTTTTATTTT TGGTGAATTTGCCTTAGGTGGAAACTTTGTTGTTGGAGCAGTTGTCTTTGTCATTCTAACAATTGTTCAGTTCCTTGTTA TTGCAAAAGGAGCTGAACGTGTTGCCGAAGTTGGTGCACGCTTTACCCTTGATGCTATGCCAGGAAAACAGATGTCTATT GATGCCGACATGCGCGCAGGCGTTATTGACATGGAAGAAGCCCAAAAACGTCGTGCACGAATAAATCAAGAAAGCCAAAT GTATGGAGCTATGGACGGTGCTATGAAATTTGTTAAAGGTGATAGCATCGCAGGAATGATAATTGCTGTTGTTAATATTG TTGGAGGTACCATTATTGGGGTCACACAACATGGAATGGCTGCCTCTGATGCCTTACATGTTTATGGTATTCTGACCATT GGTGATGGTTTAGTCTCACAAATTCCATCTCTGTTAATCTCCATTGCAGCAGGGATTCTGATTACTCGTACTGGTGACTC AGCTGAAAATGTTGGTTCTCAAATTGGTGAACAAATATTTAATCAGCCTAAAGCTCTTTTAATGGCAGGTGGAGTTGTAT TTCTTATTGCACTAGTTCCAGGTTTTCCAAAAATTCAACTTTTTGCCATTTCAGCTACTCTTGCAGGTATTGGGTATACA CTAAAACTTATTATGACTAACCCTGCACCTAAAAATGCAAAACAAAGTATAGCAAAAACATTAGAACCTACAACATCACC TTCAAAAAAATCTTCTACTGAACAGAAGGAATCAAAAGAAGAGTTTTCACCAACTGTACCTATTATATTAGATATATCTC AACAAATGAGTGAAGAGTTAGATTATGATTCACTCAATGATGAACTTATAACATTACGTCGTGTTCTATACTTTGATCTT GGTGTACCATTCCCTGGCATTAATCTTCGCATCTCATCAAAGCTACATGACCTTACTTATTCCTTAATGATTAATGAGAT TCCTATAACCAAAGGAACACTTGAAAAAGGTATGGTCTTAGCAAGGGATACAAAAGAAAATTTGGCAATGCTTGGAGTGG AACCTGAAGAAAAAGAAAAATTTCTTCCAGATGTTGAGTCTCTTTGGGTTCCAGACTCTAAAAAAGCATTGCTTGAACGG GCAGGAATAACATGTATGACACATAGTCGCATTCTTGCTTACCACTTATCCCTTGTCCTTTCACGCCATGCTTCAAACTT TCTGGGCATGCAAGAAACAAAATATCTCTTGGATAAAATGGAAGAACGTGCTCCTGATTTGGTTAGAGAAACAACTCGAT TATTACCTGTACAAAGAATTGCTGAAATTTTCCAACGTCTTGTACAAGAACAAATTTCTATACGTGACTTAAGAAGTATC CTTGAGGCTCTTATTGAGTGGAGCCCTAAAGAAAAAGATACTGTTATGCTCACAGAATATGTCCGAAGTGCGTTAAAACG TCAAATAAGTTACATGTACTCTAAAGGTCAAAACATGCTACCTGCTGTTCTTCTTGATCCAAACGTAGAAGAAACTATTA GAAAATCTGTAAGACAAACTTCTGCTGGGGCCTTCCTTGCATTAGATCCAGAAACAACACAAATATTTATGGCATCCCTT AAAGAGTTTGCATCAGAGACCAATCTAACCTATACCCAAAAACCTGTTTTAATCACTTCAATGGATATTCGTCGGTATGT ACGTAGACTCATAGAGGGAGATTATTACAACCTTCCTGTAGTGTCATACCAAGAACTTACACCAGAAATTTCTGTACAAC CTGTTGGAAGAATACGTTTCTAA Protein sequence : MSLFAKAQSTVGVITRNNDITMVLLLVTVIALMIIPLPTPLVDTLIGINMGLSFLIVMMCMYVKTVLDFSVFPTMLLFTT LFRVGLNITTTRLILLQADAGEIIFIFGEFALGGNFVVGAVVFVILTIVQFLVIAKGAERVAEVGARFTLDAMPGKQMSI DADMRAGVIDMEEAQKRRARINQESQMYGAMDGAMKFVKGDSIAGMIIAVVNIVGGTIIGVTQHGMAASDALHVYGILTI GDGLVSQIPSLLISIAAGILITRTGDSAENVGSQIGEQIFNQPKALLMAGGVVFLIALVPGFPKIQLFAISATLAGIGYT LKLIMTNPAPKNAKQSIAKTLEPTTSPSKKSSTEQKESKEEFSPTVPIILDISQQMSEELDYDSLNDELITLRRVLYFDL GVPFPGINLRISSKLHDLTYSLMINEIPITKGTLEKGMVLARDTKENLAMLGVEPEEKEKFLPDVESLWVPDSKKALLER AGITCMTHSRILAYHLSLVLSRHASNFLGMQETKYLLDKMEERAPDLVRETTRLLPVQRIAEIFQRLVQEQISIRDLRSI LEALIEWSPKEKDTVMLTEYVRSALKRQISYMYSKGQNMLPAVLLDPNVEETIRKSVRQTSAGAFLALDPETTQIFMASL KEFASETNLTYTQKPVLITSMDIRRYVRRLIEGDYYNLPVVSYQELTPEISVQPVGRIRF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 7e-154 | 51 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 3e-92 | 43 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 5e-92 | 43 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 3e-92 | 43 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 2e-107 | 43 |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-86 | 42 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 1e-86 | 42 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 6e-90 | 42 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 5e-90 | 42 |
| ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 1e-100 | 42 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 4e-91 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yscV | YP_594923.1 | type III secretion pore protein | VFG0064 | Protein | 2e-166 | 54 |
| yscV | YP_594923.1 | type III secretion pore protein | VFG0198 | Protein | 2e-146 | 52 |
| yscV | YP_594923.1 | type III secretion pore protein | VFG0384 | Protein | 7e-152 | 50 |
| yscV | YP_594923.1 | type III secretion pore protein | VFG2126 | Protein | 4e-121 | 45 |
| yscV | YP_594923.1 | type III secretion pore protein | VFG1006 | Protein | 3e-97 | 41 |
| yscV | YP_594923.1 | type III secretion pore protein | VFG2461 | Protein | 6e-100 | 41 |
