Gene Information

Name : SctR (LI0537)
Accession : YP_594912.1
Strain : Lawsonia intracellularis PHE/MN1-00
Genome accession: NC_008011
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 658119 - 658769 bp
Length : 651 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGTTTGGTGTTGATCCTCTAATAATCATTTTAGGTTTAGGAGCACTTGGACTAGCTCCGTTTGTTATAATGATGGTTAC
ATCATATGTAAAGATAGTTGTTGTAACTTCACTGATCCGTAATGCATTAGGTGTACAGCAGGTTCCTCCTGCAATTGTAA
TGAATGGATTAGCAATTATTTTAAGTATATTTATTATGGCTCCTGTATATATGAAGATGGAAGACTTGTATCTTAAAACA
GCACTTCCCTCATCGCCAGCAGCACTAGAAGTTATAAAAGCTCTTTATGATGCAACCCCACCTTTACGTGAATTTTTAAT
ACGTAATGCTGATGAGTCTACTATTAGAGGCTTAATGGTGACGGCTAAGCGTATTTGGCCTAAAGATCAGCATGAAACTA
TTTCACGCAATAATTTACTTATTATTATTCCTGCTTTTACAATTACAGAGTTAACAAAATCTTTTCAAATAGGTTTTTTA
CTTTACTTACCATTTGTTGCAATAGATCTTGTTGTATCAAATATTTTGCTTGCAATGGGCATGATGATGGTTTCACCAAT
GACTATCTCTTTGCCTTTCAAATTATTGCTTTTTGTTACATTAGATGGCTGGTTAAAAATTAGTCAAGGTTTAATGTTAA
GCTATAGATAG

Protein sequence : 
MFGVDPLIIILGLGALGLAPFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIMAPVYMKMEDLYLKT
ALPSSPAALEVIKALYDATPPLREFLIRNADESTIRGLMVTAKRIWPKDQHETISRNNLLIIIPAFTITELTKSFQIGFL
LYLPFVAIDLVVSNILLAMGMMMVSPMTISLPFKLLLFVTLDGWLKISQGLMLSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-47 54
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-39 51
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 8e-45 50
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-45 50
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-44 50
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-44 50
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-45 50
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-45 50
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 7e-45 50
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-39 50
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-38 50
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-38 50
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-39 50
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-39 50
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 8e-45 50
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-39 46
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-39 46
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-39 46
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-39 45
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-32 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-32 44
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-34 44
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-34 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 5e-34 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 4e-34 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-33 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-33 43
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 7e-42 42
unnamed AAL06354.1 EscR Virulence LEE Protein 7e-34 41
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 7e-32 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 8e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SctR YP_594912.1 type III secretion system protein VFG0188 Protein 4e-50 54
SctR YP_594912.1 type III secretion system protein VFG0394 Protein 6e-47 53
SctR YP_594912.1 type III secretion system protein VFG0044 Protein 6e-45 50
SctR YP_594912.1 type III secretion system protein VFG0519 Protein 2e-39 50
SctR YP_594912.1 type III secretion system protein VFG2338 Protein 6e-33 44
SctR YP_594912.1 type III secretion system protein VFG1259 Protein 2e-32 42