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Name : tetW (LI0179) Accession : YP_594556.1 Strain : Lawsonia intracellularis PHE/MN1-00 Genome accession: NC_008011 Putative virulence/resistance : Resistance Product : ribosomal protection tetracycline resistance protein Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0480 EC number : - Position : 225939 - 227858 bp Length : 1920 bp Strand : - Note : - DNA sequence : ATGAACATTATCAATATCGGGATTCTTGCCCATGTAGATGCGGGCAAGACGACACTGACAGAAAGCCTGCTGTATGCCAG CGGAACCATTTCAGAGCCGGGGAGCGTCGAAAAAGGGACAACGAGAACGGACACTATGTTTTTGGAGCGGCAGCGTGGAA TTACCATTCAAACGGCAGTCACTTCTTTCCAGTGGCACAGTTGTAAAGTCAATATTGTGGATACTCCCGGCCACATGGAT TTCTTGGCAGAGGTATACCGCTCTCTGGCTGTTTTGGACGGGGCCATCTTGGTGCTCTCCGCTAAAGATGGCGTGCAGGC CCAGACCCGTGTTCTGTTCCATGCCCTACGGAAATTGAACATCCCCACCATTATCTTTATCAACAAGATCGACCAGGTTG GCATTGATTTGGAGAGCGTATATCAGTCTGTTCGGGATAAGCTCTCCGCTGATATTATCATCAAGCAGACAGTGTCGCTG TCCTCGAAAATAACTCTGACAGAAAACACTAGTGCAGAGGTTTGGGATTCGGTCATCGAAAATAACGATGAGTTATTGGC AAAGTATATCGCAGGAGAATCAATCAGTCAGAAAGAACTTGCGCAAGAAGAACAGCGGCGAGTTCAAGACGCCTCCCTGC TCCCGGTCTATCATGGTAGCGCCAAAAACGGCCTTGGCATTCAACAGTTGATGGATGCGGTGATAGGGCTGTTCCAATCG ACCAAGGAACAGGGGAGCGCCGCCCTGTGCGGTAGAGTTTTTAAGGTGGAGTATACAGATTGCGGCCAGAGGCTTGTCTA TCTGCGGCTATACAGCGGAACGCTGCGTCTGCGGGATACGGTGGCCCTAGCCGGGAGAGAAAAGCTGAAAATCACAGAGA TGCGTATTCCATCCAAAGGGGAGATTGTTCGGACAGATACCGCCCATAAGGGCGAAATTGTCATCCTTCCCAGCGACAGC TTGAGATTAAACGATATATTGGGGGACAAAACCCAACTTCCTCGTGAAATGTGGAGTGATGTTCCCTTCCCTATGCTGCG GACGACGATTACGCCAAAAACGGCAGAGCAAAGAGACCGGTTGCTGGACGCTCTTACGCAAATTGCGGATACTGACCCGC TTTTGCACTACGAGGTGGATTCCACCACCCATGAGATCATTCTTTCTTTTTTGGGTCGGATGCAGTTGGAGGTTGTTTCC GCTTTGCTGACGGAAAAATACAAGATTGAAACAGCAGTGAAGGAACCCACCGTCATTTATTTAGAGCGGCCGCTCAAAGT GGCCAGTCACACCATCCATATCGAGGTGCCGCCTAACCCGTTTTGGGCATCTATCGGACTGTCTGTTACACCGCTCCCGC TTGGCTCCGGTGTAAAATACGAGAGCCGGGTTTCCCTGGGATACCTGAACCAGAGTTTTCAAAACGCTGTCATGGATGGT ATCCGTTACGGTTTGGGGCAAGGCTTGTGTGGCTGGAACGTAACGGACTGTAAGATTTGCTTTGAATACGGACTTTACTA TAGCCCGGTCAGTACGCCGGCGGACTTCCGCTCATTGGCCCCGATTGTATTGGAACAGGCATTGAAGAAATCTGGGACGC AGTTGCTGGAACCTTATCTCTCCTTCACCCTCTATGCGCCCCAGGAATACCTTTCCAGGGCTTATCATGATGCGCCGAAA TACTGTGCCACCATCGAAACGGCCCAGATAAAAAAGGATGAAGTTGTCTTTACTGGCGAGATTCCCGCCCGTTGCATACA GGCATACCGTACTGATTTGGCCTTTTACACCAACGGGCGGAGTGTGTGCCTGACGGAACTGAAAGGGTATCAGGCCACTG TCGGCGAGCCAATCATCCAGCCCCGTCGTCCAAACAGCCGTTTGGATAAGGTGCGCCATATGTTCAGTAAGATTCCTTGA Protein sequence : MNIINIGILAHVDAGKTTLTESLLYASGTISEPGSVEKGTTRTDTMFLERQRGITIQTAVTSFQWHSCKVNIVDTPGHMD FLAEVYRSLAVLDGAILVLSAKDGVQAQTRVLFHALRKLNIPTIIFINKIDQVGIDLESVYQSVRDKLSADIIIKQTVSL SSKITLTENTSAEVWDSVIENNDELLAKYIAGESISQKELAQEEQRRVQDASLLPVYHGSAKNGLGIQQLMDAVIGLFQS TKEQGSAALCGRVFKVEYTDCGQRLVYLRLYSGTLRLRDTVALAGREKLKITEMRIPSKGEIVRTDTAHKGEIVILPSDS LRLNDILGDKTQLPREMWSDVPFPMLRTTITPKTAEQRDRLLDALTQIADTDPLLHYEVDSTTHEIILSFLGRMQLEVVS ALLTEKYKIETAVKEPTVIYLERPLKVASHTIHIEVPPNPFWASIGLSVTPLPLGSGVKYESRVSLGYLNQSFQNAVMDG IRYGLGQGLCGWNVTDCKICFEYGLYYSPVSTPADFRSLAPIVLEQALKKSGTQLLEPYLSFTLYAPQEYLSRAYHDAPK YCATIETAQIKKDEVVFTGEIPARCIQAYRTDLAFYTNGRSVCLTELKGYQATVGEPIIQPRRPNSRLDKVRHMFSKIP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tet(W) | YP_005160006.1 | tetracycline resistance protein | Not tested | Not named | Protein | 0.0 | 88 |
| SSU05_0922 | YP_001198287.1 | translation elongation factor (GTPases) | Not tested | 89K | Protein | 0.0 | 69 |
| SSU98_0928 | YP_001200485.1 | translation elongation factor (GTPases) | Not tested | 89K | Protein | 0.0 | 69 |
| tetO | AFJ97266.1 | truncated tetracycline resistant protein | Not tested | Not named | Protein | 3e-142 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | AJ222769.gene.p01 | Protein | 0.0 | 89 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | DQ294299.gene.p01 | Protein | 0.0 | 88 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | AY485126.gene.p01 | Protein | 0.0 | 87 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | AJ295238.gene.p01 | Protein | 0.0 | 70 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | NC_009782.5559075.p0 | Protein | 0.0 | 69 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | AM180355.1.gene636.p | Protein | 0.0 | 69 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | NC_002758.1120355.p0 | Protein | 0.0 | 69 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | X04388.gene.p01 | Protein | 0.0 | 69 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | M85225.gene.p01 | Protein | 0.0 | 69 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | L09756.gene.p01 | Protein | 0.0 | 68 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | FN594949.1.gene24.p0 | Protein | 0.0 | 68 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | L42544.gene.p01 | Protein | 1e-129 | 44 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | AJ514254.gene.p01 | Protein | 8e-117 | 43 |
| tetW | YP_594556.1 | ribosomal protection tetracycline resistance protein | Z21523.gene.p01 | Protein | 3e-107 | 42 |
