|
Name : serS (LI0114) Accession : YP_594492.1 Strain : Lawsonia intracellularis PHE/MN1-00 Genome accession: NC_008011 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 144414 - 145688 bp Length : 1275 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : GTGTTGTTAGATCTTAAATTGTTACAAAAAAAACCTGAAATAGTGTCAACTGCACTTATTCATAGAGGATCTCCACTTAA TATAACAAGTTTTGAAGAGCTTGATACTAAACGGCGTGAACTTCTTTCTGAAGTTGAAACTCTTAAGGCTAAACGTAACC AAGCTTCTATTCAAGTTGCACAAATGAAGCGTAATGGTGAAAATACAAATACTATTATTGCAGAACTTTCTGAACTTTCG TCAAAAATTGTTGTATTAGACAATATGATAAATCAAGTAAAAAATGAACTCTATGACTGGATGCTTGCTGTCCCTAATAT CCCACACTACAGTGTTCCAATTGGAAAAGATGAAACTGATAATAAAGAAATATATAGATGGGGTGAAATACCTATATTTG ATTTTCAACCAAAGGAACATTGGGAACTAGGTTCCACTCTTCAAGGATTAGACTTTGAACGAGCAAGTAAAATTACAGGA AGTCGTTTTACAATACTATGGAAATGGGCAGCTCGACTTGAGCGTTCATTAATTAATTTTTTTCTTGATTTTCATCTAGC CCAAGGCCGTACAGAAGTTCTACCCCCACTCATTGTTAATGAAAAATCAATGACAAATACAGGTCAACTACCAAAATTTG CAGATGACCTTTTTAAACTAGAAGGAACAGACTATTTTTTGATTCCTACTGCAGAAGTTCCTCTTACAAATATACACTCT GACGAAATTATTGATGAATACCTATTACCTCTATCTTACTGTGCTCAAACAGCATGTTTTCGTTCAGAAGCAGGTTCTGC AGGTAAAGATACAAAAGGACTTATTCGACAACACCAATTTACAAAAGTTGAAATGGTCTATTTTTCTCATCCAGATCAAT CCTATGATCTTTTGGAACAAATGAGGAAAAGTGCTGAAACATTATTGGAACAACTTGAACTTCCTTATAGAACAGTTGTT CTGTGCACTGGTGATCTAGGGTTTTCTTCAAGTAAAACATATGATATAGAAGTTTGGCTTCCTGGACAAAACACATATAA AGAAATATCTTCATGTTCTAACTGCGAATCTTTTCAGGCTCGACGAGCTAATATTCGTTTTCGTGCCTCTTCTGGAGAAA AAACACAGTTTGTCCATACACTAAATGGCTCTGGGTTACCCATTGGACGTACCATTGTTGCTATCTTAGAAAATGGTCAA CAAAAAGATGGCTCTGTTAAACTTCCTAAAAAACTTGTTCCATATATGGGAGGCATAGAGTGTATTGAGCCATAG Protein sequence : MLLDLKLLQKKPEIVSTALIHRGSPLNITSFEELDTKRRELLSEVETLKAKRNQASIQVAQMKRNGENTNTIIAELSELS SKIVVLDNMINQVKNELYDWMLAVPNIPHYSVPIGKDETDNKEIYRWGEIPIFDFQPKEHWELGSTLQGLDFERASKITG SRFTILWKWAARLERSLINFFLDFHLAQGRTEVLPPLIVNEKSMTNTGQLPKFADDLFKLEGTDYFLIPTAEVPLTNIHS DEIIDEYLLPLSYCAQTACFRSEAGSAGKDTKGLIRQHQFTKVEMVYFSHPDQSYDLLEQMRKSAETLLEQLELPYRTVV LCTGDLGFSSSKTYDIEVWLPGQNTYKEISSCSNCESFQARRANIRFRASSGEKTQFVHTLNGSGLPIGRTIVAILENGQ QKDGSVKLPKKLVPYMGGIECIEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 8e-105 | 54 |
