Gene Information

Name : Acid345_0311 (Acid345_0311)
Accession : YP_589390.1
Strain : Candidatus Koribacter versatilis Ellin345
Genome accession: NC_008009
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 334627 - 335325 bp
Length : 699 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCATACTGGTCGCTGAAGACGAAAAACGGTTACTGGAGTTGCTGCGCAATGGCCTCGCAGAAGAGGGCCATAGTGT
CATCACATCTATGAACGGCGTGGACGCGCTAGATATCGCGATGTCGGGAGAGTTCGACGCATTGCTTCTTGATGTGATGC
TGCCCGGCATGGATGGCTTTGAGGTCGCCCGTCGCCTACGTCATAAAGGGAGACAAGTACCAATCCTCATGCTCACGGCC
CGCGATGCTGAGAGCGACATCATTCGCGGACTGGACAACGGTGCAGACGACTACGTCACCAAACCATTTTCGTTTTCCGA
ATTGCTTGCCCGCCTGAGAGCCGTGACGCGACGGACAGGACCGCATCGCTCGTCGACTCTCGTCTGTGAAGATCTCACGC
TCGATAGCGCCTCTCATGAAGTCTTTCGCGGCGATCGGCCAATTCATCTCACGCGAACCGAATTTCTCCTTCTCCAAAAA
CTGATGCAAAACGCCGGCCGTCCTGTGTCAAGACAATCGCTAATCGGAAACGTCTGGGGCTACGATCGGGCGATTGAGAA
CAATACGCTCGACGCATTTATCCGGTTGTTACGACAGAAAGTGGACACTCAGGGCCATCCGAAGCTCATTCAAACGGTGC
GCGGCTTTGGCTACTCCGCACGAAAACTGAGCGGCGACGACCAGGAGTTTGAGTCATGA

Protein sequence : 
MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGFEVARRLRHKGRQVPILMLTA
RDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTGPHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQK
LMQNAGRPVSRQSLIGNVWGYDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGYSARKLSGDDQEFES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-36 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-35 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acid345_0311 YP_589390.1 two component transcriptional regulator BAC0125 Protein 1e-36 47
Acid345_0311 YP_589390.1 two component transcriptional regulator BAC0197 Protein 3e-32 45
Acid345_0311 YP_589390.1 two component transcriptional regulator BAC0083 Protein 3e-33 44
Acid345_0311 YP_589390.1 two component transcriptional regulator BAC0308 Protein 3e-33 43
Acid345_0311 YP_589390.1 two component transcriptional regulator BAC0638 Protein 2e-27 43
Acid345_0311 YP_589390.1 two component transcriptional regulator HE999704.1.gene1528. Protein 4e-37 42
Acid345_0311 YP_589390.1 two component transcriptional regulator AE016830.1.gene1681. Protein 2e-35 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acid345_0311 YP_589390.1 two component transcriptional regulator VFG1390 Protein 1e-41 49
Acid345_0311 YP_589390.1 two component transcriptional regulator VFG0596 Protein 2e-36 46
Acid345_0311 YP_589390.1 two component transcriptional regulator VFG1386 Protein 2e-36 46
Acid345_0311 YP_589390.1 two component transcriptional regulator VFG0473 Protein 2e-27 41