|
Name : Acid345_1392 (Acid345_1392) Accession : YP_590468.1 Strain : Candidatus Koribacter versatilis Ellin345 Genome accession: NC_008009 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1689374 - 1691089 bp Length : 1716 bp Strand : - Note : - DNA sequence : ATGTCTCAGAGGTTGGGCGATCTTCTTGTTCGCGAGAAGGTCATCACCGCCGAGCAGTTGGAACAAGCACTCAGGGAACA AGGCTCCAGCGGCACGCGTCTTGGTGCGGCCCTGGTGAAGCTTGGTTTTCTCTCGGACGATGACGTCACCAACTTCCTCT CCCGTCAGTATGGCGTACCCGCCATCAACCTCAACTATTTCGAGATCGATCCTTCCGTCGTAAAACTCATTCCTTACGAC ACTGCGAAGCGTTACCAGATCCTTCCCTTGAGCCGCGTCGGCGCCTCGCTGACCATCGCCATGGTGGATCCCACCAACGT CTTCGCAATGGACGACATCAAGTTCATGACCGGCTTCAACATTGAGCCGGTGGTTGCCAGCGAAAGCGCGATCCTCGAAG GCATCGAGAAGGCCTACAACACCGCTCCGGAAGAAGATCTTGAGTCGGTGATGGCCTCGATGGGTGAGGGTGAGGCCTCC GATATTGAAGTCCAGGCGGACATGGAAGAGGCTGACTCCGCCGACCTCGAGCGCGCCGCCGAAGAAGCTCCGATCGTCAA GCTGGTGAACATGATCCTCACGGAAGCCGTGAAGAAGGGCGCCAGCGACATCCACATGGAGCCCTACGAAAAGGAATATC GCGTACGCTTCCGGATTGACGGCATTCTCCAGACGATGATGAATCCGCCGATGAAACTTCGCGACGCGATCATCTCGCGC GTGAAGATCATGGCAAAGCTCGACATCAGCGAAAAGCGCCTGCCGCAAGACGGCCGCATCATGCTGAAGATGAACCTCCA GGGAAAGAAGAAAGTGCTCGACTATCGCGTCAGCACCCTGCCTACCCTGTGGGGCGAAAAAGTCGTTCTCCGACTGCTCG ACAAAGAGAGCCTGCGTCTCGACATGACCAAGCTCGGCATGGAGCAGGAATCGCTCGACAAGTTCACCAAAGCTATCTTC AAGCCGTACGGGATGGTGCTGGTCACCGGTCCCACGGGATCCGGTAAGACGAACACGCTGTACTCCTCGATTTCGCAGCT CAACAAGCCCGACACCAACATCATGACCGCTGAAGATCCGGTCGAGTTCCAGTTGCACGGTGTGAACCAGGTGCAGATGA AGGAACAGATCGGCTTGAACTTCGCGGCGGCCTTGCGCTCCTTCCTGCGTCAGGACCCCAACATCATTCTCGTCGGTGAG ATCCGCGACTTTGAAACCGCGGAAATTGCGATCAAGGCCGCATTGACCGGCCACTTGGTTTTGTCGACGCTGCACACCAA CGGCGCGCCCGAAACCATCAGCCGCTTGATGAACATGGGTATCGAACCATTTCTTGTCGCGACTTCAGTGCACCTGATTG CTGCGCAGCGCTTGATCCGCCGCATTTGCAGCAACTGCGCCGAAGTCCTCGACCTGCCGCCGCAAGCGTTGATCGAAGCC GGCTATTCGCCGGCCGAGTCCAAGACGGTGAAGATCAGCAAGGGCCGCGGTTGCAGCAACTGCAACAACACGGGATATAA GGGCCGTACCGGCCTTTATGAAGTAATGGAGATTGACGACGAAATCCGGGAATTGATCCTGGTCGGCGCTTCGGCGCTGG AGTTGAAGAAGAAAGCGATCGAGAAAGGCATGATCACGCTGCGTCGCAGCGGCTTGATCAAAGTTTCACTGGGGATCACG ACGTTGGAAGAAGTCGCACGTGAAACCGTGCACTAA Protein sequence : MSQRLGDLLVREKVITAEQLEQALREQGSSGTRLGAALVKLGFLSDDDVTNFLSRQYGVPAINLNYFEIDPSVVKLIPYD TAKRYQILPLSRVGASLTIAMVDPTNVFAMDDIKFMTGFNIEPVVASESAILEGIEKAYNTAPEEDLESVMASMGEGEAS DIEVQADMEEADSADLERAAEEAPIVKLVNMILTEAVKKGASDIHMEPYEKEYRVRFRIDGILQTMMNPPMKLRDAIISR VKIMAKLDISEKRLPQDGRIMLKMNLQGKKKVLDYRVSTLPTLWGEKVVLRLLDKESLRLDMTKLGMEQESLDKFTKAIF KPYGMVLVTGPTGSGKTNTLYSSISQLNKPDTNIMTAEDPVEFQLHGVNQVQMKEQIGLNFAAALRSFLRQDPNIILVGE IRDFETAEIAIKAALTGHLVLSTLHTNGAPETISRLMNMGIEPFLVATSVHLIAAQRLIRRICSNCAEVLDLPPQALIEA GYSPAESKTVKISKGRGCSNCNNTGYKGRTGLYEVMEIDDEIRELILVGASALELKKKAIEKGMITLRRSGLIKVSLGIT TLEEVARETVH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-95 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-95 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Acid345_1392 | YP_590468.1 | type II secretion system protein E | VFG0182 | Protein | 4e-91 | 46 |
| Acid345_1392 | YP_590468.1 | type II secretion system protein E | VFG1880 | Protein | 1e-113 | 44 |
| Acid345_1392 | YP_590468.1 | type II secretion system protein E | VFG0112 | Protein | 7e-112 | 43 |
| Acid345_1392 | YP_590468.1 | type II secretion system protein E | VFG0233 | Protein | 2e-103 | 41 |
| Acid345_1392 | YP_590468.1 | type II secretion system protein E | VFG2048 | Protein | 1e-95 | 41 |
