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Name : lysS (BCI_0152) Accession : YP_588620.1 Strain : Baumannia cicadellinicola Hc Genome accession: NC_007984 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 168085 - 169605 bp Length : 1521 bp Strand : + Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGTGTAAATTAAATATTTTTGATCCCGTACAGAATTATGAAAATTTAAATCAACAATTAAATTTGCGTAGGAATAAATT AAATAATTTACGTAAACAAGGGAAAACATTTACTAATAATTTCAAACGTAATGTGATATCAAATCAATTATTTTTACAAT ATGGAGAAAAAAACAACGAAACATTAAAAACACTAAATATACAAGTCAGTTTAGCTGGTCGTATGATAAATCGTCGTATT ATGGGTAAAGCATCATTTGTTATTCTACAAGATAGTGGTGGAACAATACAACTATATCTATCCTCAAAAAATTTATCAGA TTCATTTTATAATGAACATTTTAAAAAATGGGATTTAGGTGATATTTTAGGAGTCCACGGTAGGTTATTCAAAACAAAAA CTGGTGAATTAACTATAAACTGTAATGAAATAATTTTATTAACAAAAGCTTTACGTCCCATACCCAATAAGTTTCATGGT ATAGTTGATAAACAAATACGTTATCGACAAAGATATTTAGATTTAATAACAAATAAAAATTCTTTTAATTTATTTAAAAC TAGATCACAAATTATAACAGAAATACGTCAATTTTTAAATAAAGAAGATTTTATTGAAGTAGAAACTCCTATTTTGCAAT CTTTACCAGGTGGTGCTACTGCACGTCCATTTATTACTTACCATAATGCATTAGATATGAATCTATATCTTCGGATAGCA CCAGAATTATATTTAAAACAATTAATAATTGGTGGTTTCGAAAAAATTTTTGAAATTAATCGTAATTTTCGTAATGAAGG TTTATCTGCACATCATAATCCAGAGTTTACCATGATGGAACTTTATATAGCTTATGCAGATTATCATGATGTAATGTTAT TAACTCAAAATTTATTAAACACAATTACCAATCATGTTTTAGGTACTAATATAATTCAATATGGTAATCTAAAGCTCGAT TTTAGTAAAAATTTTGTAAAAATGACTATGAAAGAAGCTATTTGTCATTATAATAAACAGATTTTATCTAAGCATTTAGA TGATAAAATGCAAGCAATAACTTGTGCAAAAAATATTGGTATACATATAGATCAAAAATGGGGTTTAGGTAGAATCCAAA CGGAAATATTTGAAAAAACGACAGAGAAACATTTATTACAACCAACTTTCATTACTTCTTATCCAATAGAAGTATCACCA CTTGCACGTCGTAATGATAATAATCCATTTTTTGCTGATCGTTTTGAATTATTTATTGGAGGTTACGAAATAGGTAACGG TTTCTCAGAACTAAATGATTATGAAGATCAAGCAAATCGCCTTATTGAACAAGCTACAATAAAAAACAGTGGTGATAACG AATCAATGTTTTATGATGAAGATTATATTATTGCACTTGAACATGGTTTGCCACCAACAGCTGGATTAGGTATTGGAATT GATCGATTAGTTATGCTATTAACTAATAGTCATTTCATTCGAGATGTTATTTTATTTCCAACAATGCGTCTCAAGATATA A Protein sequence : MCKLNIFDPVQNYENLNQQLNLRRNKLNNLRKQGKTFTNNFKRNVISNQLFLQYGEKNNETLKTLNIQVSLAGRMINRRI MGKASFVILQDSGGTIQLYLSSKNLSDSFYNEHFKKWDLGDILGVHGRLFKTKTGELTINCNEIILLTKALRPIPNKFHG IVDKQIRYRQRYLDLITNKNSFNLFKTRSQIITEIRQFLNKEDFIEVETPILQSLPGGATARPFITYHNALDMNLYLRIA PELYLKQLIIGGFEKIFEINRNFRNEGLSAHHNPEFTMMELYIAYADYHDVMLLTQNLLNTITNHVLGTNIIQYGNLKLD FSKNFVKMTMKEAICHYNKQILSKHLDDKMQAITCAKNIGIHIDQKWGLGRIQTEIFEKTTEKHLLQPTFITSYPIEVSP LARRNDNNPFFADRFELFIGGYEIGNGFSELNDYEDQANRLIEQATIKNSGDNESMFYDEDYIIALEHGLPPTAGLGIGI DRLVMLLTNSHFIRDVILFPTMRLKI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-140 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_588620.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-140 | 60 |
