Gene Information

Name : kpsC (Rmet_5736)
Accession : YP_587864.1
Strain :
Genome accession: NC_007974
Putative virulence/resistance : Virulence
Product : capsule polysaccharide modification protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3563
EC number : -
Position : 2495904 - 2497952 bp
Length : 2049 bp
Strand : +
Note : -

DNA sequence : 
ATGGTATTCGCGGTGGTCACTCCGGGCCTGTGGCGCACGCCCGGGCTTCGCAGGTTTTTTCACGAGGGCGTCGCCTTTCG
CCCCCGGCAACATGTCGATGCCGTGCTCGGCTGGGGCGATAAGCCATCCAGCATCAAGGCCCGCGCGTGGGCCGCACGGC
GGCACTTGCCATTCCTGTCTGTGGAGGACGGCTTTCTGCGCTCCATTCATCCGGGACGGAGCAGACAGGGTCTTCTCTCG
CTGGTGGTAGATGATCTGGGCATTTACTACGATGCTCACCATCCATCCCGCCTGGAACAGTACATCGCGCAGGGCGACGC
GTCGGCGGCCGAGCGGGATGCCGGAGCCCGGGCGATGCAGTTGGTGCTGCAGCACAGGCTTTCCAAGTACAACCACATGG
GTGAACTGCAGCTTCCCTCGAGCACGCCGGGCAAGCCGCGTGTGCTGGTCGTGGACCAAACGGAAGGCGATCTGTCTCTG
TTACGCGGTGGTGCAAGCGCGGACACATTTGCACGAATGATCGCGGTCGCGCTTGCCGATCATCCGGCTGCCGAGATATG
GATCAAGACCCATCCGGATGTTCTTTCCGGCAAGCGGCGCGGGCATTACGAGCAATGCCGGTTGGATAGCCGCGTCCACT
TTCTGGCACAGGAATGCTGCCCTCTCTCTCTGCTCACGCAGATGGATCACGTCTACGTGGCCACTTCTCATATGGGATTC
GAAGCATTGATGGTCGGTAAGCCGGTGACCTGTTTTGGCCTGCCCTGGTACGCGGGCTGGGGCCTCACTCATGACGTGCA
TCCGGAAGCGGCCCGCCTTGCACTGCGGCGCGGGGGCAAACGAAACGTAGTTGACCTCTTCGTCGCAGCCTACATCCAAT
ATACGCGCTACATCCATCCCGTCACGGGGGAGTCCGCGTCGATCTTCGATGTCATCAAATGGCTGGCCTGCAACAAGGCA
ATCGAGCAGGAAGGAAGGGCGCCTACATACTGCGTCGGCATGTCGCTTTGGAAGCGTGCTACGGTCATGCCCTTCCTCGC
AGCGAGCACGATCAGGAGTCTGCGCCACCTCAGTCCGGACAAACTGAGCCGATTGCCTCAGGATTCGACGATCGCCCTCT
GGGGCGATCGTCATGCTGGCTTGATAGCCCGCGCGCGGGCTCGCGGACTGACCGTTCTGCAGATGGAGGACGGGTTCGTG
CGCTCCGCGGGGCTCGGCTCCGACCTCCATGCCCCGCTTTCGCTTGCTATTGATCCACATGGCGTTCACTACGACCCCAA
GTCGGCCAGCAAGCTGGAACAGTTGCTCTCGACGAGCACGGTGAATCACGACGATGCCGCGCGTGGGCGGCGGATACGCG
AGTCGCTCGTCCGCAATGGTATCGACAAATACAACCTTGACCACGCGACCACTCCAGTCCTGCCCGCACAAGCTCTAGGA
AGACGAATCATCCTGGTGATCGGGCAAGTCGAGGACGACGCCTCGGTTCGGATCGGCTCTACTTTGGTGAAGGGCAACGA
TGCCCTTATTGCTGTGACACGCCGTGCAAATCCGGATGCGTGGCTGATCTACAAGAGCCATCCGGACGTCGAGGCTGGAA
ACCGCATTGGCTCGCTAAAGCCGGCCTCCGAGACATTGGCTGATCAGATCATCACTGAAGCTAGTCTGGGCGCCTGTTTG
GTCCTGGCCGACGAGGTACACGTCATGACGTCACTGTCCGGCTTTGAGGCCCTATTGCGAGGGAAAGTCGTGCATTGCTA
TGGCGCGCCGTTCTACGCCGGCTGGGGCCTGACCACGGATCACTTTCCCTTGCCACGGAGGCAGCGGCGCCTGACGTTGG
ACGAGCTGGTGTTTGTCGCGCTGTGCTTGTATCCGCGCTACCGCTTGCCGGGTGTGGAAGGATTCTGCTCGGTGGAGGAC
GTTGTCGACTGGCTTGCGAAACGCAAGGGCGCAAGGCGCGGGCGGACAGGCGAGTCCTGGCTGGTCAGGCAAGGGCGCAA
GGCTGGCCATCTGGCCCACTCCGTCCTGCAGCATGCCAGGTACGTCTAA

Protein sequence : 
MVFAVVTPGLWRTPGLRRFFHEGVAFRPRQHVDAVLGWGDKPSSIKARAWAARRHLPFLSVEDGFLRSIHPGRSRQGLLS
LVVDDLGIYYDAHHPSRLEQYIAQGDASAAERDAGARAMQLVLQHRLSKYNHMGELQLPSSTPGKPRVLVVDQTEGDLSL
LRGGASADTFARMIAVALADHPAAEIWIKTHPDVLSGKRRGHYEQCRLDSRVHFLAQECCPLSLLTQMDHVYVATSHMGF
EALMVGKPVTCFGLPWYAGWGLTHDVHPEAARLALRRGGKRNVVDLFVAAYIQYTRYIHPVTGESASIFDVIKWLACNKA
IEQEGRAPTYCVGMSLWKRATVMPFLAASTIRSLRHLSPDKLSRLPQDSTIALWGDRHAGLIARARARGLTVLQMEDGFV
RSAGLGSDLHAPLSLAIDPHGVHYDPKSASKLEQLLSTSTVNHDDAARGRRIRESLVRNGIDKYNLDHATTPVLPAQALG
RRIILVIGQVEDDASVRIGSTLVKGNDALIAVTRRANPDAWLIYKSHPDVEAGNRIGSLKPASETLADQIITEASLGACL
VLADEVHVMTSLSGFEALLRGKVVHCYGAPFYAGWGLTTDHFPLPRRQRRLTLDELVFVALCLYPRYRLPGVEGFCSVED
VVDWLAKRKGARRGRTGESWLVRQGRKAGHLAHSVLQHARYV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 1e-127 47
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 2e-110 44
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 2e-110 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsC YP_587864.1 capsule polysaccharide modification protein VFG0259 Protein 6e-128 47
kpsC YP_587864.1 capsule polysaccharide modification protein VFG0704 Protein 6e-110 43
kpsC YP_587864.1 capsule polysaccharide modification protein VFG0692 Protein 2e-123 42