Gene Information

Name : tnpA (Rmet_5456)
Accession : YP_587584.1
Strain :
Genome accession: NC_007974
Putative virulence/resistance : Unknown
Product : transposase DNA binding site ISRme11
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 2203521 - 2203793 bp
Length : 273 bp
Strand : -
Note : -

DNA sequence : 
ATGAGCGGCAAGCGGTACACGGATGAGTTCAAGATTGAGGCAGTCAAGCAAGTCACTGAGCGCGGTCATTCGGTGGCGGA
TGTGGCGCAGAGGTTGGGCATCACGACCCATAGCCTGTACGCCTGGAAGAGGAAGTTCGAGAAACCGGACGTCGTGCAGC
GGGCCGAACTGGATCAGAACGCCGAGATTCGACGACTGAAGGCCGAGCTCAAGCGCGTGACAGAGGAGCGCGACATTCTA
AAAAAAGCCGCCGCGTACTTTGCAAAGGGATAG

Protein sequence : 
MSGKRYTDEFKIEAVKQVTERGHSVADVAQRLGITTHSLYAWKRKFEKPDVVQRAELDQNAEIRRLKAELKRVTEERDIL
KKAAAYFAKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 6e-16 50
S4064 NP_839234.1 IS3 orfA Not tested SHI-2 Protein 3e-05 42
SF3703 NP_709442.1 IS3 ORF1 Not tested SHI-2 Protein 3e-05 42
unnamed AAT48700.1 transposon-related Not tested PAI II 4787 Protein 9e-05 42
yis1_SHISO CAD66178.1 hypothetical protein of insertion element IS1 Not tested PAI III 536 Protein 9e-05 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpA YP_587584.1 transposase DNA binding site ISRme11 VFG1632 Protein 3e-05 42
tnpA YP_587584.1 transposase DNA binding site ISRme11 VFG0603 Protein 8e-06 42