Gene Information

Name : Rmet_5392 (Rmet_5392)
Accession : YP_587520.1
Strain :
Genome accession: NC_007974
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator ygiX
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2117889 - 2118548 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence : 
ATGAGAGTTCTTCTCATCGAGGATGAACCGTGGCTTGGGCAGGCCGTCCGCGACCAGATCGAAAAGGACGGGCATCCGAC
CGACTTCGTGGCCAATCTCGCCGATGCGCGCCGACATCTTGCGGCCGCAACCTACGACCTGATCCTGCTAGACCTGCTGC
TGCCCGATGGCCGCGGCCTTGATTTCCTGCGTGAACTGCGCGCGAGCGGATCGAACGTGCCCATCATCATCCTGACCGCG
CTCGATCAGGTGTCGAATCGCATTGCCGGTCTGAACGCCGGCGCGGATGACTACCTGGTCAAGCCGTTCGACCTGTCCGA
ACTGTCCGCGCGCGTCAGCGCGGTGGCGCGTCGGTACGCGGGTAATCCGAATCCATTGGTGAATCTTGGCGACCTACGCA
TCGACACGGCCGGGCATAGCGTGATGCGCGGCGAAACCCGCGTCGACCTGACGGCCAGCGAATGGGCGCTGCTTGAGGCA
CTGATCCAGCATCCGGGCATGATCGTGTCGCGGGCAAGGCTCGAGGAACGGCTTTACTCCTTCAACGAGGAAGTCGGCAG
CAACACCATCGAGGTCCATATGAGCCGGCTGCGCAAGAAACTTGGCGCGGATGTCATCGAGACCTTGCGCGGGCTAGGCT
ATCGACTCAGGCGGGACTGA

Protein sequence : 
MRVLLIEDEPWLGQAVRDQIEKDGHPTDFVANLADARRHLAAATYDLILLDLLLPDGRGLDFLRELRASGSNVPIIILTA
LDQVSNRIAGLNAGADDYLVKPFDLSELSARVSAVARRYAGNPNPLVNLGDLRIDTAGHSVMRGETRVDLTASEWALLEA
LIQHPGMIVSRARLEERLYSFNEEVGSNTIEVHMSRLRKKLGADVIETLRGLGYRLRRD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rmet_5392 YP_587520.1 winged helix family two component transcriptional regulator ygiX NC_002516.2.879194.p Protein 9e-20 41
Rmet_5392 YP_587520.1 winged helix family two component transcriptional regulator ygiX BAC0638 Protein 9e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rmet_5392 YP_587520.1 winged helix family two component transcriptional regulator ygiX VFG1390 Protein 1e-21 43