Gene Information

Name : tnpB (Rmet_3348)
Accession : YP_585489.1
Strain : Cupriavidus metallidurans CH34
Genome accession: NC_007973
Putative virulence/resistance : Unknown
Product : transposase catalytic site ISRme3
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3625435 - 3626328 bp
Length : 894 bp
Strand : -
Note : -

DNA sequence :
GTGAGGTATGCGTTCATCGAGCGAAACCGACGTTACTGGCCGGTCTCGGTCCTGTGTGAGCTGTTAGGGGTCAGCCCCAG
CGGCTATCACCAGCGCAAGCAACGCACAGTAAGCACCGACAGGCCAGATAGAGGCCGACTCAGTGACGATGCCTTGTTGG
CCCACATCAAGGCGATTCACGCCGGGGTCAAGGGGGAGTACGGCTGGCCGCGCATGTGGAAGGAACTGCTGGCGCGTGGG
GTGCGGGTGGGCAAGGAGCGTGTTCGCAAGCTGATGGCGCTGCACGGCATCCGTGCCCGCCACAAGCGCAAGTACATCGC
GACAACCAACTCGAACCACGATTTGCCGGTGGCCCCCAATCTGCTGCAACGCGACTTTAGCCCAGCAGCACCCAATCAAG
TCTGGACGAGCGACATAACCTATGTGGCGACCGCCGAAGGCTGGCTCTACCTGGTGGTCATCATCGACCTGTTCAGCCGG
CAGGTGGTTGGCTGGTCGATGCAACCACACATGAAGGCCGAATTGGTCACGGACGCGCTGCGCATGGCCTGGTTCCGGCG
CCGCCCGGAAGCCGGTGTGATTGTGCACACCGACCGGGGAAGCCAGTATTGCAGCCATCTGTTTCAAGACGCCCTGAAGG
CGTATGGCATGCGCTCGTCAATGAGCCGCAGGGGCGATTGCTGGGACAACGCGCCGACTGAGAGTCTGTGGGGGTCGTTG
AAGGTCGCTCGCCTGCACGGTCGCCAGTTCGCTACCCGCCGCGCCGCAATGGACGAGGTAATTGACTGGCTTGGCTTTTA
TAATGCCAGCCGACTCCACTCGACGCTGGGCTACGTCAGCCCCATGACGTTCGAGAAAAACTGGTCCGCAGCTCAGCAAC
ACCGGGCTGCCTAA

Protein sequence :
MRYAFIERNRRYWPVSVLCELLGVSPSGYHQRKQRTVSTDRPDRGRLSDDALLAHIKAIHAGVKGEYGWPRMWKELLARG
VRVGKERVRKLMALHGIRARHKRKYIATTNSNHDLPVAPNLLQRDFSPAAPNQVWTSDITYVATAEGWLYLVVIIDLFSR
QVVGWSMQPHMKAELVTDALRMAWFRRRPEAGVIVHTDRGSQYCSHLFQDALKAYGMRSSMSRRGDCWDNAPTESLWGSL
KVARLHGRQFATRRAAMDEVIDWLGFYNASRLHSTLGYVSPMTFEKNWSAAQQHRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 8e-44 46
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 8e-44 46
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 8e-44 46
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 2e-49 46
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 3e-49 46
unnamed AAF09030.1 unknown Not tested SHI-O Protein 5e-49 45
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 5e-49 45
unnamed AAF09022.1 unknown Not tested SHI-O Protein 2e-49 45
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 5e-49 45
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 8e-48 45
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 5e-49 45
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 5e-49 45
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-42 44
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 2e-42 43
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 5e-43 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 5e-43 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpB YP_585489.1 transposase catalytic site ISRme3 VFG1706 Protein 1e-49 46
tnpB YP_585489.1 transposase catalytic site ISRme3 VFG1631 Protein 1e-42 43