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Name : Rmet_2353 (Rmet_2353) Accession : YP_584499.1 Strain : Cupriavidus metallidurans CH34 Genome accession: NC_007973 Putative virulence/resistance : Unknown Product : type IV secretory pathway, VirB4 components Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3451 EC number : - Position : 2564230 - 2567121 bp Length : 2892 bp Strand : + Note : - DNA sequence : ATGCGGTGGAAACTCCCATGGCCGAAGCTGGCCGGCGCCGGCTCCAGTAGCCCGGCTAGCGATGAGCAGCCGGACAGCTG GCAGCGCCACGTCGAGGCCTTGCGCCAGGCCGGCATCCCCGAACCCGGTTCGGCAGTCCACGGCCGCAAGCCAGCGACCG TGGCCGACGAGCAGGCGCTGTACGACGTTGCGCCGTCCTTCGTGGAACTGCTGCCCTGGGTGGAGTTCTTGCCCGGGTCG AAATCGATGCTCCTGGAGGATGGCCAATCGGTGGCGGCGTTCTACGAACTGGTGCCGCTGGGCACCGAAGGCCGGGAACC CGGCTGGCTCGCGCATGCCCGCGACGCCCTGGAAAACGCGCTTCAGGACAGTTTCGATGAACTGGACGAGAACCCGTGGG TGCTCCAGCTCTATGCCCAGGACGAACCGAGCTTCGACCAGTACATGCAGACCTTGCGCGATTACGTGCAGCCACGTGCG CGCGGCTCGGCGTTCACCGAGTTCTACTTGCGCTTCTTCGGCCACCACCTGCGCGCTGTGGCCAAGCCCGGCGGCCTGTT CGAGGACACGGTGGTTACGCGGCTGCGCTGGCGCGGGCAGACGCGGCGTGTGCGCATGGTGGTGTACCGCCGCGCGAGCG GACAGGGACAGGCAAACCGCCGCGGCCAGACACCCGAGCAGATGCTGGGCATCGTCTGCGACCGCCTATGCGGCGGCCTG GCGAACGCCGGCATCCAGGCCCGGCGCATGGTTGCAGCGGACGTTCACGACTGGCTGCTGCGATGGTTCAACCCGCGCCC CACGCTGCTCGGCCCTGGGGTGGAGGACCGGGAGCGCTTCTACGCGTTGGCGCGCTATCCGGACAGTACCGAGGAAAGCG AGGCCGGCGAGATCGAGTTGGCGAGCGGGCGGGATTTCAGCCAGCGGCTGTTCTTTGGGCAGCCGCGCTCGGACGTGGCG CAAGGGGCCTGGTACTTCGACGGCATGCCGCACCGCGTGCTGATCACCGACCGGCTGCGCATGCCGCCCGGCACCGGGCA CCTGACCGGCGAGACCCGCAAGGGAGACGCGATCAACACGCTATTCGATCAGATGCCCGAGGACACCTTGATGTGTCTCA CCATGGTGGCCACGCCGCAGGACGTCCTCGAATCGGACCTCAACCATCTGGCGAAGAAAGCTGTGGGCGAGACGCTGGCG TCGGAGCAGACGCTCAAGGACGTGCATGAAGCCCGCTCCCTGATCGGCAGCGCGCACAAGCTCTACCGGGGCACTCTGGC GTTCTACCTACGCGGGCGCGACGAGGCGGAACTGGATCGGCGCGGCCTGGACCTCGCGAACGTGATGCTCAACGCCGGCC TGCAGCCGGTGCGCGAGGACGACGAGGTGGCGCCGCTCAACAGCTACCTGCGCTGGCTGCCGTGCTGCTACAACCCCGGC AAGGACCGGCGCCGGTGGTACACGCAACTGATGTTCGCCCAGCACGCGGCGAACCTGTCGCCGGTGTGGGGCCGCGCCCA GGGCACGGGGCACCCCGGCATCACGATGTTCAATCGCGGAGGCGGCCCGATTACGTTTGACCCCTTGAACAGGTTGGATC GGCAGATGAATGCCCATCTGTTCCTGTTCGGTCCCACGGGCTCGGGCAAGAGCGCCACGCTCAACAACCTGCTGAACCAG GTCACCGCGATCTATCGGCCGCGCCTCTTCATCGTGGAAGCCGGCAACAGCTTCGGCTTGTTCAGCGACTTCGCCAGGCG CCTGGGGCTGACCGTGAACCGGGTCAAGCTGGCACCCGGCTCGGGCATCAGCCTGGCGCCGTTCGCCGACGCACGCCGGC TGATCGAAACGCCCAGCGACGTGCAGACGCTCGATGCCGATGCACTGGACGAAGACCTGCCACCGGATGCCTCGGCCATG GAGGCGGACGAGCAGCGCGACGTGCTGGGCGAGCTGGAGATCACGGCACGGCTGATGATCACGGGCGGCGAAGACAAGGA AGAAGCGCGGATGACGCGGGCCGACCGCTCGCTGATCCGCCAGTGCATCCTCGACGCGGCCGAACATTGCGTGGCAGAGA AGCGCACTGTGCTCACGCGCGATGTGCGCAATGCGCTGCGCACCCGCGGCCAGGACCCGACGTTGCCCGAGATGCGGCGC GTGCGGCTGCTGGAGATGGCGGACGCGATGGACATGTTCTGCCAAGGCACGGACGGCGAGATGTTCGACCGCGACGGCAC GCCGTGGCCCGAGGCCGACATCACGCTGGTCGATCTGGCGACCTACGCCCGCGAGGGCTACAACGCGCAGCTCTCGATCG CGTACATCAGCCTCATCAGCACGGTGAACAACATCGCGGAGCGTGACCAGTATCTCGGCCGCCCGATCATCAACGTGACC GACGAAGGCCACGTGATCACCAAGAACCCGCTGCTCGCGCCGTATACCGTGAAAATTACAAAAATGTGGCGCAAGCTGGG GGCCTGGTACTGGCTAGCTACACAAAATATTGACGACCTACCGCGCGCCGCGGAGCCGATGCTCAACATGATCGAGTGGT GGATCTGCCTGTCGATGCCCCCCGATGAAGTGGAGAAGATCGCGCGGTTCCGCGAACTGAGCCAAGCGCAGAAAGCGCTG ATGCTCTCGGCACGCAAGGAAGCGGGCAAGTTCACCGAGGGCGTCATCCTCTCCAAGAGCATGGAGGTGCTCTTCCGCGC CGTGCCGCCGAGCCTGTATCTCGCGCTCGCGCAGACCGAACCCGAAGAGAAGGCCGAGCGCTACCAGCTCATGCAGCAGC ACGGCGTCAGCGAGTTGGATGCCGCCTTCAAGGTGGCCGAGAAGATCGACCGGGCACGCGGCATCGAGTCGCCGGCCCTG GACCTGCCCTGA Protein sequence : MRWKLPWPKLAGAGSSSPASDEQPDSWQRHVEALRQAGIPEPGSAVHGRKPATVADEQALYDVAPSFVELLPWVEFLPGS KSMLLEDGQSVAAFYELVPLGTEGREPGWLAHARDALENALQDSFDELDENPWVLQLYAQDEPSFDQYMQTLRDYVQPRA RGSAFTEFYLRFFGHHLRAVAKPGGLFEDTVVTRLRWRGQTRRVRMVVYRRASGQGQANRRGQTPEQMLGIVCDRLCGGL ANAGIQARRMVAADVHDWLLRWFNPRPTLLGPGVEDRERFYALARYPDSTEESEAGEIELASGRDFSQRLFFGQPRSDVA QGAWYFDGMPHRVLITDRLRMPPGTGHLTGETRKGDAINTLFDQMPEDTLMCLTMVATPQDVLESDLNHLAKKAVGETLA SEQTLKDVHEARSLIGSAHKLYRGTLAFYLRGRDEAELDRRGLDLANVMLNAGLQPVREDDEVAPLNSYLRWLPCCYNPG KDRRRWYTQLMFAQHAANLSPVWGRAQGTGHPGITMFNRGGGPITFDPLNRLDRQMNAHLFLFGPTGSGKSATLNNLLNQ VTAIYRPRLFIVEAGNSFGLFSDFARRLGLTVNRVKLAPGSGISLAPFADARRLIETPSDVQTLDADALDEDLPPDASAM EADEQRDVLGELEITARLMITGGEDKEEARMTRADRSLIRQCILDAAEHCVAEKRTVLTRDVRNALRTRGQDPTLPEMRR VRLLEMADAMDMFCQGTDGEMFDRDGTPWPEADITLVDLATYAREGYNAQLSIAYISLISTVNNIAERDQYLGRPIINVT DEGHVITKNPLLAPYTVKITKMWRKLGAWYWLATQNIDDLPRAAEPMLNMIEWWICLSMPPDEVEKIARFRELSQAQKAL MLSARKEAGKFTEGVILSKSMEVLFRAVPPSLYLALAQTEPEEKAERYQLMQQHGVSELDAAFKVAEKIDRARGIESPAL DLP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF C47 | AAN62141.1 | hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 99 |
| ORF SG57 | AAN62279.1 | hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 80 |
| virB4 | CAI36125.1 | VirB4 component | Not tested | PPHGI-1 | Protein | 0.0 | 66 |
| unnamed | ABR13362.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 0.0 | 62 |
| RL022 | AAP84149.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 0.0 | 62 |
| EXA33 | ABD94642.1 | conserved hypothetical protein | Not tested | ExoU island A | Protein | 0.0 | 61 |
| YE3482 | YP_001007641.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 52 |
| api39 | CAF28513.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 52 |
| YpsIP31758_3705 | YP_001402659.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 52 |
| STY4573 | NP_458658.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 51 |
| PMI2576 | YP_002152295.1 | hypothetical protein | Not tested | Not named | Protein | 0.0 | 51 |
| Pmu_03070 | YP_005176206.1 | conjugative transfer ATPase TraC-like, PFL family | Not tested | ICEPmu1 | Protein | 0.0 | 49 |
