Gene Information

Name : virD4 (Rmet_2336)
Accession : YP_584482.1
Strain : Cupriavidus metallidurans CH34
Genome accession: NC_007973
Putative virulence/resistance : Unknown
Product : VirD4, type IV secretory pathway, VirD4 components
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3505
EC number : -
Position : 2548986 - 2551175 bp
Length : 2190 bp
Strand : +
Note : -

DNA sequence :
ATGTCGGGCAAACAGCCGGTCGAGGTTCTGCTACGCCCAGCGGTGGAGCTATACACCGTCGCGGCGTGTGCAGGCGCCGC
GTTTCTGTGCCTGGTGGCCCCATGGTCGCTCGCGCTGAGCCCGGCCATGGGCATCGGCAGCGCCTTGGCGTTCGGCGCCT
ACGGCGCGATCCGCTACCGCGATGCCCGCATCATCCTGCGCTACCGGCGCAACATCCGCCGTCTGCCGCGTTACGTGATG
ACCAGCAAGGACGTGCCGGTCAGCCAGCAGCGCCTATTCGTGGGGCGCGGCTTTCTCTGGGAGCAGAAGCACACGCATCG
GCTGATGCAGACGTACCGGCCCGAGTTCCGCCGCTACGTCGAGCCGACGCCGGCCTACCGGCTGACCAGGCGCCTGGAGG
AACGGCTGGAGTTCGCGCCATTGCCGCTCTCGCGCCTGCCGAAGCTCACCGGCTGGGACGCGCCTTTCAACCCCGTGCGC
CCGTTGCCGCCTGTCGGCGGCCTGCCAAGGCTGCACGGCATCGAGCCCGACGAAGTGGACGTCAGCCTGCCGCTGGGCGA
GCGCGTCGGGCACTCGCTGGTGCTGGGCACCACGCGGGTGGGCAAGACGCGCCTGGCCGAGTTGTTCGTCACGCAGGACA
TCCGTCGCAGGAATGCTGCCGGCGAGCATGAGGTCGTCATCGTCATCGACCCCAAGGGGGATGCCGATCTCTTGAAACGG
ATGTACGTCGAAGCCCAGCGCGCTGGCCGCGAAGGCGAGTTCTACATCTTCCACTTGGGCTGGCCGGAAATCAGCGCCCG
CTACAACGCCGTGGGCCGCTTCGGTCGGATCTCGGAAGTGGCGACACGCATCGCGGGGCAGCTCTCCGGCGAAGGCAACA
GCGCGGCGTTCCGCGAGTTCGCATGGCGCTTCGTGAACATCATCGCCCGCGCCCTGGTGGAACTGGGGCAGCGCCCGGAC
TACATGCTGATCCAGCGCCACGTCATCAACATCGACGCGCTGTTCATTGAGTACGCCCAGCACTACTTTGCCAAGACGGA
GCCCAAGGCCTGGGAGGTGATCGTCCAGATCGAGGCCAAGCTCAACGAGAAGAACATCCCAAGGAACATGATCGGGCGCG
AGAAGCGTGTGGTGGCGCTGGAGCAATACCTCTCCCAGGCGCGCAACTACGACCCTGTGCTCGATGGCCTGCGCTCGGCG
GTGCGCTACGACAAGACCTACTTCGACAAGATCGTTGCATCGCTGCTGCCGCTGCTGGAAAAGCTCACGAGCGGCAAGAT
CGCCCAGCTCCTGGCGCCGAACTACTCCGACCTGGCCGACCCGCGCCCGATCTTCGACTGGATGCAGGTGATCAGGAAGC
GCGCCGTCGTCTATGTCGGCTTGGACGCGCTGTCCGATGCGGAGGTCGCCGCAGCGGTCGGCAACTCGATGTTCAGCGAT
CTCGTCTCGGTGGCTGGGCACATCTACAAGCACGGAATCGACGATGGCCTGCCGGGCGCATCGGCTGGTGCGCGCGTGCC
GATCAACGTGCATGCGGACGAGTTCAATGAATTGATGGGTGACGAGTTCATTCCGCTCATCAACAAGGGCGGTGGCGCGG
GCCTGCAAGTCACCGCCTACACGCAAACGCTTTCGGACATCGAGGCCCGCATCGGCAACCGCGCGAAGGCCGGCCAAGTG
ATCGGGAATTTCAACAATTTATTCATGTTGCGCGTGCGCGAGACGGCCACCGCGGAACTGCTGACGAGGCAGTTGCCGAA
GGTCGAGGTCTATACGACCACCATCGTCTCGGGCGCGACGGACAGCTCAGACATCCGCGGCGCGACGGACTTCACGTCGA
ACACCCAGGACCGCATCAGCATGGCCAGCGTGCCGATGATCGAGCCGTCACACGTCGTCGGTCTGCCCAAGGGCCAATGC
TTCGCGCTGCTGCAGGGCGGCCAGCTTTGGAAGGTGCGCATGCCGCTTCCGGCGCCAGACCCCGATGAAGTGATGCCGAC
GGACTTGCAGCAACTGGCCGGGTATATGCGCCAGAGCTACAGCGAGGCCACGCAGTGGTGGGAGTTCACCAGTTCCGCAG
CCTTGCCGCATGCAGCCTTGCCCGACGACCTGCTGGATGACGCCGCTCCAGCCGAGCCTGACGCGGTGGCCACCGGCGCC
GACGACAGCACCGGCGAGGCCGCACCATGA

Protein sequence :
MSGKQPVEVLLRPAVELYTVAACAGAAFLCLVAPWSLALSPAMGIGSALAFGAYGAIRYRDARIILRYRRNIRRLPRYVM
TSKDVPVSQQRLFVGRGFLWEQKHTHRLMQTYRPEFRRYVEPTPAYRLTRRLEERLEFAPLPLSRLPKLTGWDAPFNPVR
PLPPVGGLPRLHGIEPDEVDVSLPLGERVGHSLVLGTTRVGKTRLAELFVTQDIRRRNAAGEHEVVIVIDPKGDADLLKR
MYVEAQRAGREGEFYIFHLGWPEISARYNAVGRFGRISEVATRIAGQLSGEGNSAAFREFAWRFVNIIARALVELGQRPD
YMLIQRHVINIDALFIEYAQHYFAKTEPKAWEVIVQIEAKLNEKNIPRNMIGREKRVVALEQYLSQARNYDPVLDGLRSA
VRYDKTYFDKIVASLLPLLEKLTSGKIAQLLAPNYSDLADPRPIFDWMQVIRKRAVVYVGLDALSDAEVAAAVGNSMFSD
LVSVAGHIYKHGIDDGLPGASAGARVPINVHADEFNELMGDEFIPLINKGGGAGLQVTAYTQTLSDIEARIGNRAKAGQV
IGNFNNLFMLRVRETATAELLTRQLPKVEVYTTTIVSGATDSSDIRGATDFTSNTQDRISMASVPMIEPSHVVGLPKGQC
FALLQGGQLWKVRMPLPAPDPDEVMPTDLQQLAGYMRQSYSEATQWWEFTSSAALPHAALPDDLLDDAAPAEPDAVATGA
DDSTGEAAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C65 AAN62159.1 conserved hypothetical protein Not tested PAGI-2(C) Protein 0.0 100
ORF SG68 AAN62290.1 conserved hypothetical protein Not tested PAGI-3(SG) Protein 0.0 88
traG CAI36113.1 putative TraG family conjugative protein Not tested PPHGI-1 Protein 0.0 74
EXA47 ABD94656.1 TraG/TraD family protein Not tested ExoU island A Protein 0.0 70
unnamed ABR13375.1 hypothetical protein Not tested PAGI-5 Protein 0.0 70
RL047 AAP84173.1 conserved hypothetical protein Not tested PAPI-1 Protein 0.0 69
api27 CAF28501.1 hypothetical protein Not tested YAPI Protein 0.0 63
STY4562 NP_458648.1 hypothetical protein Not tested SPI-7 Protein 0.0 62
t4260 NP_807858.1 hypothetical protein Not tested SPI-7 Protein 0.0 62
YpsIP31758_3718 YP_001402672.1 hypothetical protein Not tested YAPI Protein 0.0 62
YE3493 YP_001007651.1 TraG-family protein Not tested YAPI Protein 0.0 62
PMI2588 YP_002152307.1 plasmid transfer protein Not tested Not named Protein 0.0 62
Pmu_03190 YP_005176218.1 conjugal transfer protein TraD Not tested ICEPmu1 Protein 0.0 60
traD AAW83057.1 TraD Not tested GGI Protein 7e-125 50