Gene Information

Name : dnaB (Rmet_1975)
Accession : YP_584123.1
Strain : Cupriavidus metallidurans CH34
Genome accession: NC_007973
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 2150962 - 2152353 bp
Length : 1392 bp
Strand : -
Note : -

DNA sequence :
ATGAACGCGCCCGCCGCAGATCCCCAACTAGACAGTCTCAAGGTTCCACCGCATTCCATCGAGGCCGAGCAATCGGTACT
TGGCGGGTTGCTGCTGGATAACGCCGCCTGGGACCGGATTGCCGACTTCATTTCTGAGGCGGATTTCTATCGTTTCGACC
ATCGGCTGATCTTTCAGAGCATTGCCCGTCTGATTTCGGCGACCAAGCCGGCCGACGTGATCACTGTCTTCGAGATGCTC
CAGGGAGCTGGCAAGGCCGAGGAGGTCGGAGGGCTGGCCTACCTGAACTCGCTGGCCCAAAACACGCCGAGTGCGGCCAA
TATCCGTCGTTACGCGGAAATCGTGCGCGAACGTGCGGTGCTGCGCAAGCTCGTGACCGTCGCCGATGACATTGCGTCGG
CGGCCTTCGCGCCCAAGGGGCGTGAGGTGCGCGAGCTGCTCGACGAAGCCGAGTCGAAAGTATTCGCCATTGCCGAAGAG
GGCGCGCGTGGCCAGAAGGGCTTCCAGGAAATCCAGCCGCTGCTGACGCAGGTGGTCGAGCGGATCGACGAGCTTTACCA
CCGTGACTCCACCACCGATGTGACCGGCGTACCCACCGGTTTCATCGACCTCGACCGCATGACCAGTGGTATGCAGGCGG
GGGATCTCATCATCGTGGCAGGGCGCCCCTCGATGGGTAAGACGGCATTCTCACTGAACATTGGCGAACACGTGGCTGTC
GAGCAGGGGCTGCCTGTAGCGGTCTTCTCGATGGAAATGGCGGGCGTCCAGCTGGCCATGCGTATGCTGGGTTCGGTGGG
GCGCCTCGATCAGCATCGCCTGCGTACCGGTCGACTGCTCGACGAGGACTGGCCGCGCTTGACGCACTCGATTCAGCGCA
TGAACGACGCGCAGTTGTTCATCGATGAGACGCCGGCGTTGAATCCCATGGAGTTGCGTGCCCGTTCCCGCCGTCTGGCG
CGGCAATGTGGGCAGCTTGGCCTGATCATCATCGATTACCTCCAACTGATGTCGGGTTCGGGTAGCGGCGAGAACCGTGC
CACCGAGATCTCGGAAATCTCGCGTTCGCTGAAGGGGTTGGCCAAGGAGCTCAACTGCCCGGTCATTGCCTTGTCGCAGC
TGAACCGCAGTCTGGAACAGCGCCCGAACAAGCGCCCCGTGATGTCCGACTTGCGAGAGTCGGGCGCTATCGAACAGGAT
GCCGACGTGATTCTGTTCATCTATCGCGACGAAGTTTACAACCCGGATTCGCAAGACAAGGGCACGGCCGAGATCATCAT
CGGCAAGCAGCGTAACGGTCCAATCGGTACCGTTAGGCTCACGTTCCTAGGTCAATTCACGAAATTTGACAATTTTAGCG
GTGGTCCGGCGTTCTTCGACAACGACACCTGA

Protein sequence :
MNAPAADPQLDSLKVPPHSIEAEQSVLGGLLLDNAAWDRIADFISEADFYRFDHRLIFQSIARLISATKPADVITVFEML
QGAGKAEEVGGLAYLNSLAQNTPSAANIRRYAEIVRERAVLRKLVTVADDIASAAFAPKGREVRELLDEAESKVFAIAEE
GARGQKGFQEIQPLLTQVVERIDELYHRDSTTDVTGVPTGFIDLDRMTSGMQAGDLIIVAGRPSMGKTAFSLNIGEHVAV
EQGLPVAVFSMEMAGVQLAMRMLGSVGRLDQHRLRTGRLLDEDWPRLTHSIQRMNDAQLFIDETPALNPMELRARSRRLA
RQCGQLGLIIIDYLQLMSGSGSGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD
ADVILFIYRDEVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFLGQFTKFDNFSGGPAFFDNDT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 2e-108 54
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 4e-96 50
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 4e-96 50
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 9e-92 48
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 8e-93 47
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 2e-88 47
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 8e-89 46
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 8e-89 46
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 9e-76 45