Gene Information

Name : tnpA (Rmet_1264)
Accession : YP_583418.1
Strain : Cupriavidus metallidurans CH34
Genome accession: NC_007973
Putative virulence/resistance : Unknown
Product : transposase (DDE site) ISRme20
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 1385440 - 1386450 bp
Length : 1011 bp
Strand : -
Note : -

DNA sequence :
GTGGAAATACGTGTGTTGGCCCGCCAAGGATTAGGAATCCGGGAGATCTCGCGGGAACTGGGGCTGTCGAGGAACACCGT
GCGCAAATACTTACGCAGTTGTGCTGAGCAGGATCGTGCGCCGCGATCGGGGCGCACGCAGAAGCTCGATCCGTTCAAAA
CCTATCTGCATGACCGGGTTCGCGCAGCGCATCCGGCCTGGCTGCCGGCGACCGCGCTGCTGATCGAGATTCGCGCGATG
GGTTATGACGGAGGCCTGACGCGGCTGCGGGTCTATCTGCGGTCGCTGAAGTCGATCAAGGCGCCGGAGCCACTGGTACG
TTTCGAAACCGATCCGGGGCAGCAGATGCAGGTCGACTGGATCGTGTTTCGACGTGGCAAGCTGCCGCTGTCGGCATTCG
TTGCGACGCTCGGTTACAGTCGGGCGAGTTACGTCGAGTTCGTGACCGACGAACGATTGCCGACGCTGCTGGGATGCCAT
GAGCGCGCGTTCGACTTCTTCGGTGGGGTTCCTCGCGAGGTCCTGTACGACAACGTCAAGACGGTGGTGATTGGCCGAGA
CGCCTATGGTCCCGGACTGCATCGCTATCAACCGGCCTTCCTCGACTTTGCGAAGCACCACGGCTTCGTGCCGCGCCTGT
GCAAGCCCTACCGAGCGAAGACCAAGGGGAAGGTTGAGCGCTTCAACGGATACCTGCGCCGCAGCTTCTACAATCCGCTG
GCAAGCCGGCTCGCTCAGGATCGCCTCTCGCTTGACGCGACCACGGCGAACGCCGAGGTCGTGCGCTGGCTGAGAGATGT
CGCCAATGTGCGCATCCACGGCACGACTGGACAGTCGCCGCTCGAGCGTCTCCTGCTTGAGCAACCGAAGCTGCAGCAGT
TGCCGGAGCCGTGGCGCGCGAACCTGCCGTCAGCTTCCGTGCCGACGATGCCACCGCCGTCGCGGTTCGATGATACGCCG
CTGCAGCATCAGCTGTCAGTGTATCAAGCCCTGCTGACGGAGGCACGTTGA

Protein sequence :
MEIRVLARQGLGIREISRELGLSRNTVRKYLRSCAEQDRAPRSGRTQKLDPFKTYLHDRVRAAHPAWLPATALLIEIRAM
GYDGGLTRLRVYLRSLKSIKAPEPLVRFETDPGQQMQVDWIVFRRGKLPLSAFVATLGYSRASYVEFVTDERLPTLLGCH
ERAFDFFGGVPREVLYDNVKTVVIGRDAYGPGLHRYQPAFLDFAKHHGFVPRLCKPYRAKTKGKVERFNGYLRRSFYNPL
ASRLAQDRLSLDATTANAEVVRWLRDVANVRIHGTTGQSPLERLLLEQPKLQQLPEPWRANLPSASVPTMPPPSRFDDTP
LQHQLSVYQALLTEAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 2e-71 54
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 2e-71 54
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 3e-71 54
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 2e-71 54
y2411 NP_669718.1 transposase Not tested HPI Protein 3e-71 54
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-71 54
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 3e-71 54
unnamed CAA21403.1 - Not tested HPI Protein 3e-71 54
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 2e-71 54
api83 CAF28557.1 transposase Not tested YAPI Protein 2e-71 54
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 3e-71 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpA YP_583418.1 transposase (DDE site) ISRme20 VFG1626 Protein 1e-71 54
tnpA YP_583418.1 transposase (DDE site) ISRme20 VFG1607 Protein 1e-71 54
tnpA YP_583418.1 transposase (DDE site) ISRme20 VFG1514 Protein 1e-71 54
tnpA YP_583418.1 transposase (DDE site) ISRme20 VFG1461 Protein 2e-71 50