Gene Information

Name : tnpB (Rmet_1263)
Accession : YP_583417.1
Strain : Cupriavidus metallidurans CH34
Genome accession: NC_007973
Putative virulence/resistance : Unknown
Product : transposase/IS protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 1384634 - 1385440 bp
Length : 807 bp
Strand : -
Note : -

DNA sequence :
ATGGACATCCAGCACGAACGTATCCTCGAAGCCTGTCGACAACTGCGGATCGACACGATGGGCGAGCAGTACAGCATGTT
GGCAGCTCGCGCGGCAGCGAACCAACTCACGTTTGCCGACTTCTTCGAGGCGCTGTTGAAATCTGCGATGGACGCGAAGC
ACACGCGGACCAAATCCATGTTGCTGCGCACGGCCGGCTTCCCTGTGCTGAAGACGCTGGAGGAGTTCGACTTTACGTTT
GCTCACGGCGTTGCCAAGAAATCGGTGCTGGAGCTGTCGTCGATGGCCTTCGTCGAGCGCGCCGAGAACATCGTGTTGCT
CGGGCCGAGCGGCCTTGGCAAAACGCATCTGGCGATCGCACTCGGTTACATCGCAACGCAGATGGGGATCAAGACGCGCT
TCATCTCTGCGGCGGATCTCGTCATTGCCTTGGCCGCCGCTTCCCGGCAGGATCGATTGGCCGACTTCCTGAAGCGCAAC
ATCATGAACCCACGGCTGTTGATCATTGATGAGGTCGGCTATCTGCCGCTCGGCCGGGACGATGCCAATCTGTTCTTCCA
GGTGATCGCCAAGCGGTATGAAAAGGGTTCCGTGATCGTAACGAGCAACTTGCCGTTCGGGCAATGGGACCAGACGTTCG
CCGGAGATCAGACGCTCACGGCCGCGTTGCTCGACCGCCTCCTGCATCACAGCCATGTTCTACAGATCAAAGGCGAAAGC
TACCGACTGAAGGACAAGCGAAAAGCCGGCGTGATCCGATCCCGTGCATCCGAAAGTGCTGAACAGCAACTGGAGATGCA
CGCGTAA

Protein sequence :
MDIQHERILEACRQLRIDTMGEQYSMLAARAAANQLTFADFFEALLKSAMDAKHTRTKSMLLRTAGFPVLKTLEEFDFTF
AHGVAKKSVLELSSMAFVERAENIVLLGPSGLGKTHLAIALGYIATQMGIKTRFISAADLVIALAAASRQDRLADFLKRN
IMNPRLLIIDEVGYLPLGRDDANLFFQVIAKRYEKGSVIVTSNLPFGQWDQTFAGDQTLTAALLDRLLHHSHVLQIKGES
YRLKDKRKAGVIRSRASESAEQQLEMHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 4e-57 65
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 2e-70 57
api84 CAF28558.1 putative transposase Not tested YAPI Protein 2e-70 57
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-70 57
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 3e-70 57
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 2e-70 57
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 2e-70 57
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 2e-70 57
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 2e-70 57
unnamed CAA21402.1 - Not tested HPI Protein 2e-70 57
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 2e-70 57
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 2e-70 57
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 3e-70 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpB YP_583417.1 transposase/IS protein VFG1460 Protein 2e-57 65
tnpB YP_583417.1 transposase/IS protein VFG1627 Protein 9e-71 57
tnpB YP_583417.1 transposase/IS protein VFG1606 Protein 9e-71 57
tnpB YP_583417.1 transposase/IS protein VFG1663 Protein 2e-70 57
tnpB YP_583417.1 transposase/IS protein VFG1515 Protein 9e-71 57